SMTL ID : 2fdp.2 (2 other biounits)

Crystal structure of beta-secretase complexed with an amino-ethylene inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x FRP: N1-((2S,3S,5R)-3-AMINO-6-(4-FLUOROPHENYLAMINO)-5-METHYL-6-OXO-1-PHENYLHEXAN-2-YL)-N3,N3-DIPROPYLISOPHTHALAMIDE(Non-covalent)

FRP.1: 23 residues within 4Å: Chain A: G.14, Q.15, G.16, L.33, D.35, G.37, S.38, V.72, P.73, Y.74, T.75, Q.76, F.111, I.113, I.121, I.129, R.131, Y.201, I.229, D.231, G.233, T.234, T.235 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:L.33, A:V.72, A:Y.74, A:Q.76, A:F.111, A:I.113, A:I.121, A:I.129, A:Y.201, A:I.229 Hydrogen bonds: A:D.35, A:G.37, A:T.75, A:T.75, A:Q.76, A:Y.201, A:G.233, A:T.234, A:T.235 Water bridges: A:N.236 pi-Stacking: A:Y.74

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, W. et al., Aminoethylenes: a tetrahedral intermediate isostere yielding potent inhibitors of the aspartyl protease BACE-1. J.Med.Chem. (2006)

Release Date

2006-01-24

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Beta-secretase 1

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