SMTL ID : 4gid.1 (3 other biounits)

Structure of beta-secretase complexed with inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x 0GH: N-[(2S)-1-({(2S,3R)-3-hydroxy-1-[(2-methylpropyl)amino]-1-oxobutan-2-yl}amino)-3-phenylpropan-2-yl]-5-[methyl(methylsulfonyl)amino]-N'-[(1R)-1-phenylethyl]benzene-1,3-dicarboxamide(Non-covalent)

0GH.1: 26 residues within 4Å: Chain A: G.14, Q.15, G.16, L.33, D.35, G.37, V.72, P.73, Y.74, T.75, Q.76, F.111, I.113, W.118, I.121, Y.201, I.229, D.231, S.232, G.233, T.234, T.235, N.236, R.238, S.328, A.338 29 PLIP interactions: 29 interactions with chain A Hydrophobic interactions: A:L.33, A:V.72, A:Y.74, A:Y.74, A:Q.76, A:F.111, A:F.111, A:I.113, A:W.118, A:I.121, A:T.234, A:A.338 Hydrogen bonds: A:G.37, A:T.75, A:T.75, A:Q.76, A:Q.76, A:Y.201, A:Y.201, A:D.231, A:G.233, A:G.233, A:T.234, A:T.235, A:T.235, A:N.236, A:N.236, A:S.328 Water bridges: A:R.238

1 x LPD: L-PROLINAMIDE(Non-covalent)

LPD.2: 8 residues within 4Å: Chain A: G.11, C.158, G.159, A.160, L.164, S.172, V.173, G.174 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:A.160 Hydrogen bonds: A:C.158, A:S.172, A:S.172 Water bridges: A:V.173

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ghosh, A.K. et al., Structure-based design of highly selective beta-secretase inhibitors: synthesis, biological evaluation, and protein-ligand X-ray crystal structure. J.Med.Chem. (2012)

Release Date

2012-10-10

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-secretase 1

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