SMTL ID : 3ixj.1 (2 other biounits)

Crystal structure of beta-secretase 1 in complex with selective beta-secretase 1 inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x 586: N-[4-(1-BENZYLCARBAMOYL-2-METHYL-PROPYLCARBAMOYL)-1-(3,5-DIFLUORO-PHENOXYMETHYL)-2-HYDROXY-4-METHOXY-BUTYL]-5-(METHANESULFONYL-METHYL-AMINO)-N'-(1-PHENYLETHYL)-ISOPHTHALAMIDE(Non-covalent)

586.1: 31 residues within 4Å: Chain A: G.14, Q.15, G.16, L.33, D.35, G.37, S.38, V.72, P.73, Y.74, T.75, Q.76, G.77, K.78, K.110, F.111, I.113, W.118, I.121, I.129, Y.201, I.229, D.231, S.232, G.233, T.234, T.235, N.236, R.238, S.328, A.338 30 PLIP interactions: 30 interactions with chain A Hydrophobic interactions: A:L.33, A:L.33, A:V.72, A:P.73, A:Y.74, A:Y.74, A:Q.76, A:I.113, A:I.129, A:Y.201, A:T.235, A:A.338 Hydrogen bonds: A:D.35, A:G.37, A:P.73, A:T.75, A:Q.76, A:Q.76, A:Y.201, A:D.231, A:G.233, A:G.233, A:T.234, A:T.235, A:N.236, A:N.236, A:S.328 Water bridges: A:T.235, A:R.238 pi-Stacking: A:F.111

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: T.75, R.238, S.330, S.331 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.331, A:T.332 Water bridges: A:R.238, A:T.332 Salt bridges: A:R.238

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bjorklund, C. et al., Design and Synthesis of Potent and Selective BACE-1 Inhibitors. J.Med.Chem. (2010)

Release Date

2010-03-02

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-secretase 1

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