SMTL ID : 2i72.1

AmpC beta-lactamase in complex with 5-diformylaminomethyl-benzo[b]thiophen-2-boronic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x VA1: {5-[(DIFORMYLAMINO)METHYL]-1-BENZOTHIEN-2-YL}BORONIC ACID(Covalent)

VA1.1: 10 residues within 4Å: Chain A: G.60, S.61, K.64, Q.117, D.120, Y.147, N.149, Y.218, G.314, A.315 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:Y.218, A:Y.218, A:Y.218 Hydrogen bonds: A:S.61, A:Y.147, A:A.315, A:A.315 Water bridges: A:N.149 VA1.2: 11 residues within 4Å: Chain B: G.60, S.61, K.64, Q.117, V.118, D.120, Y.147, N.149, Y.218, G.314, A.315 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:Q.117, B:Y.218, B:Y.218 Hydrogen bonds: B:S.61, B:V.118, B:N.149, B:A.315, B:A.315 Water bridges: B:Y.218

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Venturelli, A. et al., Optimizing Cell Permeation of an Antibiotic Resistance Inhibitor for Improved Efficacy. J.Med.Chem. (2007)

Release Date

2007-09-11

Peptides

Beta-lactamase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Beta-lactamase

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