SMTL ID : 2ivu.1

Crystal structure of phosphorylated RET tyrosine kinase domain complexed with the inhibitor ZD6474

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

4 x FMT: FORMIC ACID(Non-functional Binders)

FMT.1: 8 residues within 4Å: Chain A: Q.211, L.224, F.225, H.227 Chain B: G.1, P.2, L.3, S.4 5 PLIP interactions: 1 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:Q.211, B:G.1, B:L.3, B:S.4, B:S.4 FMT.2: 5 residues within 4Å: Chain A: R.174, L.196, K.208, G.212, R.213 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.174, A:R.174, A:R.213 FMT.4: 8 residues within 4Å: Chain A: G.1, P.2, L.3, S.4 Chain B: Q.211, L.224, F.225, H.227 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:G.1, A:L.3, A:S.4, A:S.4, B:Q.211 FMT.5: 5 residues within 4Å: Chain B: R.174, L.196, K.208, G.212, R.213 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.174, B:R.174, B:R.213

2 x ZD6: Vandetanib(Non-covalent)

ZD6.3: 18 residues within 4Å: Chain A: L.31, G.32, V.39, A.57, V.58, K.59, E.76, L.80, L.103, V.105, E.106, Y.107, A.108, K.109, G.111, L.182, S.192, D.193 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.31, A:L.31, A:V.39, A:K.59, A:K.59, A:V.105, A:Y.107, A:L.182 Hydrogen bonds: A:A.108 Water bridges: A:K.29, A:S.112 ZD6.6: 18 residues within 4Å: Chain B: L.31, G.32, V.39, A.57, V.58, K.59, E.76, L.80, L.103, V.105, E.106, Y.107, A.108, K.109, G.111, L.182, S.192, D.193 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:L.31, B:L.31, B:V.39, B:K.59, B:K.59, B:V.105, B:Y.107, B:L.182 Hydrogen bonds: B:A.108 Water bridges: B:K.29, B:S.112

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Knowles, P.P. et al., Structure and chemical inhibition of the RET tyrosine kinase domain. J. Biol. Chem. (2006)

Release Date

2006-08-10

Peptides

PROTO-ONCOGENE TYROSINE-PROTEIN KINASE RECEPTOR RET PRECURSOR: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

PROTO-ONCOGENE TYROSINE-PROTEIN KINASE RECEPTOR RET PRECURSOR

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