SMTL ID : 2jxr.2 (1 other biounit)

STRUCTURE OF YEAST PROTEINASE A

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x NAG- NAG- BMA- BMA- MAN: alpha-D-mannopyranose-(1-2)-beta-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG-NAG-BMA-BMA-MAN.1: 10 residues within 4Å: Chain A: N.68, T.70, D.101, D.127, D.132, K.133, V.134, V.135, Y.139, Q.143 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.127, A:D.127, A:D.132 NAG-NAG-BMA-BMA-MAN.4: 10 residues within 4Å: Chain B: N.68, T.70, D.101, D.127, D.132, K.133, V.134, V.135, Y.139, Q.143 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.127, B:D.132 Water bridges: B:D.101

2 x 2Z3: N-(morpholin-4-ylcarbonyl)-L-phenylalanyl-N-[(1R)-1-(cyclohexylmethyl)-3,3-difluoro-2,2-dihydroxy-4-(methylamino)-4-oxobutyl]-L-norleucinamide(Non-covalent)

2Z3.2: 16 residues within 4Å: Chain A: Q.14, D.33, G.35, S.36, Q.75, Y.76, G.77, T.78, T.112, F.118, I.121, D.218, G.220, T.221, S.222, F.294 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:Q.14, A:Y.76, A:T.78, A:F.118, A:I.121, A:T.221, A:F.294 Hydrogen bonds: A:G.35, A:S.36, A:G.77, A:T.78, A:T.78, A:T.78, A:T.221, A:T.221, A:S.222, A:S.222, A:S.222 Water bridges: A:L.223 2Z3.5: 16 residues within 4Å: Chain B: Q.14, D.33, G.35, S.36, Q.75, Y.76, G.77, T.78, T.112, F.118, I.121, D.218, G.220, T.221, S.222, F.294 19 PLIP interactions: 19 interactions with chain B Hydrophobic interactions: B:Q.14, B:Y.76, B:T.78, B:F.118, B:I.121, B:T.221, B:F.294 Hydrogen bonds: B:G.35, B:S.36, B:G.77, B:T.78, B:T.78, B:T.221, B:T.221, B:T.221, B:S.222, B:S.222, B:S.222 Water bridges: B:L.223

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 4 residues within 4Å: Chain A: I.262, G.267, N.269, T.271 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.271 NAG.6: 4 residues within 4Å: Chain B: I.262, G.267, N.269, T.271 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Aguilar, C.F. et al., The three-dimensional structure at 2.4 A resolution of glycosylated proteinase A from the lysosome-like vacuole of Saccharomyces cerevisiae. J.Mol.Biol. (1997)

Release Date

1997-10-29

Peptides

PROTEINASE A: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

PROTEINASE A

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