SMTL ID : 2ohm.1

X-ray crystal structure of beta secretase complexed with N~3~-benzylpyridine-2,3-diamine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

2 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 3 residues within 4Å: Chain A: T.120, E.121, S.122 Ligand excluded by PLIP IOD.2: 1 residues within 4Å: Chain A: K.124 Ligand excluded by PLIP

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 3 residues within 4Å: Chain A: R.113, N.115, E.151 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:E.151

1 x 8AP: N~3~-BENZYLPYRIDINE-2,3-DIAMINE(Non-covalent)

8AP.4: 9 residues within 4Å: Chain A: L.47, D.49, G.51, Y.88, F.125, I.135, D.245, G.247, T.248 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.47, A:F.125, A:I.135 Hydrogen bonds: A:D.49, A:D.49, A:G.51, A:Y.88, A:T.248

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Murray, C.W. et al., Application of fragment screening by X-ray crystallography to beta-Secretase. J.Med.Chem. (2007)

Release Date

2007-03-13

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-secretase 1

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