SMTL ID : 2ohp.1

X-ray crystal structure of beta secretase complexed with compound 3

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

monomer

Ligands

2 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 4 residues within 4Å: Chain A: H.62, T.120, E.121, S.122 Ligand excluded by PLIP IOD.2: 2 residues within 4Å: Chain A: H.62, K.124 Ligand excluded by PLIP

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 5 residues within 4Å: Chain A: T.99, R.113, A.114, N.115, E.151 2 PLIP interactions: 2 interactions with chain A Water bridges: A:N.115 Salt bridges: A:E.151

1 x 6IP: 6-[2-(1H-INDOL-6-YL)ETHYL]PYRIDIN-2-AMINE(Non-covalent)

6IP.4: 15 residues within 4Å: Chain A: G.28, Q.29, G.30, L.47, D.49, G.51, S.52, Y.88, F.125, I.127, I.135, D.245, G.247, T.248, T.249 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.47, A:Y.88, A:I.135 Hydrogen bonds: A:D.49, A:D.49, A:G.247

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Congreve, M. et al., Application of fragment screening by X-ray crystallography to the discovery of aminopyridines as inhibitors of beta-secretase. J.Med.Chem. (2007)

Release Date

2007-05-01

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-secretase 1

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