SMTL ID : 2oht.1

X-ray crystal structure of beta secretase complexed with compound 7

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

3 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 4 residues within 4Å: Chain A: H.62, T.120, E.121, S.122 Ligand excluded by PLIP IOD.2: 2 residues within 4Å: Chain A: H.62, K.124 Ligand excluded by PLIP IOD.3: 1 residues within 4Å: Chain A: R.366 Ligand excluded by PLIP

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.4: 5 residues within 4Å: Chain A: T.99, R.113, N.115, E.151, Q.160 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:E.151

1 x IP6: N~3~-[3-(1H-INDOL-6-YL)BENZYL]PYRIDINE-2,3-DIAMINE(Non-covalent)

IP6.5: 15 residues within 4Å: Chain A: G.28, Q.29, G.30, L.47, D.49, G.51, S.52, Y.88, F.125, I.127, W.132, I.135, D.245, G.247, T.248 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.47, A:W.132, A:I.135 Hydrogen bonds: A:D.49, A:D.49, A:S.52, A:G.247, A:T.248 pi-Stacking: A:Y.88, A:F.125

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Congreve, M. et al., Application of fragment screening by X-ray crystallography to the discovery of aminopyridines as inhibitors of beta-secretase. J.Med.Chem. (2007)

Release Date

2007-03-13

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-secretase 1

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