- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-dimer
- Ligands
- 10 x SO4: SULFATE ION(Non-functional Binders)
- 2 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)
SAH.6: 18 residues within 4Å:- Chain A: S.65, G.67, G.90, C.91, G.92, G.95, W.96, T.113, K.114, H.119, V.139, D.140, V.141, F.142, D.155, I.156
- Ligands: SO4.5, CIT.8
15 PLIP interactions:15 interactions with chain A- Hydrogen bonds: A:S.65, A:C.91, A:G.95, A:W.96, A:W.96, A:T.113, A:K.114, A:H.119, A:D.140, A:D.140, A:V.141, A:D.155
- Water bridges: A:G.67, A:G.94, A:S.97
SAH.15: 18 residues within 4Å:- Chain B: S.65, G.67, G.90, C.91, G.92, G.95, W.96, T.113, K.114, H.119, V.139, D.140, V.141, F.142, D.155, I.156
- Ligands: SO4.14, CIT.17
13 PLIP interactions:13 interactions with chain B- Hydrogen bonds: B:S.65, B:C.91, B:G.95, B:W.96, B:W.96, B:T.113, B:K.114, B:H.119, B:D.140, B:V.141
- Water bridges: B:G.67, B:G.94, B:S.97
- 2 x G3A: GUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE(Non-covalent)
G3A.7: 12 residues within 4Å:- Chain A: K.23, L.26, N.27, L.29, K.31, F.34, K.38, S.159, S.160, P.161, S.223
- Chain B: P.117
20 PLIP interactions:20 interactions with chain A- Hydrogen bonds: A:K.23, A:N.27, A:N.27, A:N.27, A:L.29, A:L.29, A:S.159, A:S.159, A:S.223
- Water bridges: A:K.31, A:K.31, A:K.31, A:K.31, A:S.159, A:S.159, A:S.159, A:S.223
- Salt bridges: A:K.38
- pi-Stacking: A:F.34, A:F.34
G3A.16: 12 residues within 4Å:- Chain A: P.117
- Chain B: K.23, L.26, N.27, L.29, K.31, F.34, K.38, S.159, S.160, P.161, S.223
20 PLIP interactions:20 interactions with chain B- Hydrogen bonds: B:K.23, B:N.27, B:N.27, B:N.27, B:L.29, B:L.29, B:S.159, B:S.159, B:S.223
- Water bridges: B:K.31, B:K.31, B:K.31, B:K.31, B:E.158, B:S.159, B:S.159, B:S.223
- Salt bridges: B:K.38
- pi-Stacking: B:F.34, B:F.34
- 2 x CIT: CITRIC ACID(Non-functional Binders)
CIT.8: 9 residues within 4Å:- Chain A: K.114, D.140, F.142, F.143
- Chain B: V.165, G.168, R.169, R.172
- Ligands: SAH.6
8 PLIP interactions:4 interactions with chain A, 4 interactions with chain B- Hydrophobic interactions: A:F.142, A:F.142
- Hydrogen bonds: A:D.140, B:R.172
- Salt bridges: A:K.114, B:R.169, B:R.172, B:R.172
CIT.17: 9 residues within 4Å:- Chain A: V.165, G.168, R.169, R.172
- Chain B: K.114, D.140, F.142, F.143
- Ligands: SAH.15
8 PLIP interactions:4 interactions with chain B, 4 interactions with chain A- Hydrophobic interactions: B:F.142, B:F.142
- Hydrogen bonds: B:D.140, A:R.172
- Salt bridges: B:K.114, A:R.169, A:R.172, A:R.172
- 2 x GOL: GLYCEROL(Non-functional Binders)
GOL.9: 3 residues within 4Å:- Chain A: K.39, R.66, R.221
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:K.38, A:K.39, A:K.39, A:R.66, A:R.221, A:R.221
GOL.18: 3 residues within 4Å:- Chain B: K.39, R.66, R.221
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:K.38, B:K.39, B:K.39, B:R.66, B:R.221, B:R.221
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Egloff, M.P. et al., Structural and functional analysis of methylation and 5'-RNA sequence requirements of short capped RNAs by the methyltransferase domain of dengue virus NS5. J.Mol.Biol. (2007)
- Release Date
- 2007-08-28
- Peptides
- type II methyltransferase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-dimer
- Ligands
- 10 x SO4: SULFATE ION(Non-functional Binders)
- 2 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)
- 2 x G3A: GUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE(Non-covalent)
- 2 x CIT: CITRIC ACID(Non-functional Binders)
- 2 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Egloff, M.P. et al., Structural and functional analysis of methylation and 5'-RNA sequence requirements of short capped RNAs by the methyltransferase domain of dengue virus NS5. J.Mol.Biol. (2007)
- Release Date
- 2007-08-28
- Peptides
- type II methyltransferase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A