- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.76 Å
- Oligo State
- homo-dimer
- Ligands
- 18 x SO4: SULFATE ION(Non-functional Binders)
- 2 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)
SAH.10: 18 residues within 4Å:- Chain A: S.65, G.67, G.90, C.91, G.92, G.95, W.96, T.113, K.114, H.119, V.139, D.140, V.141, F.142, D.155
- Ligands: SO4.4, SO4.5, CIT.11
10 PLIP interactions:10 interactions with chain A- Hydrogen bonds: A:S.65, A:G.95, A:W.96, A:W.96, A:K.114, A:K.114, A:D.140, A:D.140, A:V.141, A:D.155
SAH.22: 18 residues within 4Å:- Chain B: S.65, G.67, G.90, C.91, G.92, G.95, W.96, T.113, K.114, H.119, V.139, D.140, V.141, F.142, D.155
- Ligands: SO4.16, SO4.17, CIT.23
8 PLIP interactions:8 interactions with chain B- Hydrogen bonds: B:S.65, B:G.95, B:W.96, B:W.96, B:K.114, B:K.114, B:D.140, B:V.141
- 2 x CIT: CITRIC ACID(Non-functional Binders)
CIT.11: 10 residues within 4Å:- Chain A: K.114, D.140, F.142, F.143, R.172
- Chain B: V.165, G.168, R.169, R.172
- Ligands: SAH.10
9 PLIP interactions:6 interactions with chain B, 3 interactions with chain A- Hydrophobic interactions: B:V.165
- Hydrogen bonds: B:R.172, B:R.172, A:D.140
- Salt bridges: B:R.169, B:R.172, B:R.172, A:K.114, A:R.172
CIT.23: 10 residues within 4Å:- Chain A: V.165, G.168, R.169, R.172
- Chain B: K.114, D.140, F.142, F.143, R.172
- Ligands: SAH.22
9 PLIP interactions:3 interactions with chain B, 6 interactions with chain A- Hydrogen bonds: B:D.140, A:R.172, A:R.172
- Salt bridges: B:K.114, B:R.172, A:R.169, A:R.172, A:R.172
- Hydrophobic interactions: A:V.165
- 2 x GTA: P1-7-METHYLGUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE(Non-covalent)
GTA.12: 12 residues within 4Å:- Chain A: K.23, L.26, N.27, L.29, F.34, K.38, S.159, S.160, P.161, S.223
- Chain B: P.117, G.118
11 PLIP interactions:11 interactions with chain A- Hydrogen bonds: A:K.23, A:N.27, A:L.29, A:L.29, A:S.159, A:S.159, A:S.160, A:S.223
- Salt bridges: A:K.38
- pi-Stacking: A:F.34, A:F.34
GTA.24: 12 residues within 4Å:- Chain A: P.117, G.118
- Chain B: K.23, L.26, N.27, L.29, F.34, K.38, S.159, S.160, P.161, S.223
11 PLIP interactions:11 interactions with chain B- Hydrogen bonds: B:K.23, B:N.27, B:L.29, B:L.29, B:S.159, B:S.159, B:S.160, B:S.223
- Salt bridges: B:K.38
- pi-Stacking: B:F.34, B:F.34
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Egloff, M.P. et al., Structural and functional analysis of methylation and 5'-RNA sequence requirements of short capped RNAs by the methyltransferase domain of dengue virus NS5. J.Mol.Biol. (2007)
- Release Date
- 2007-08-28
- Peptides
- type II methyltransferase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.76 Å
- Oligo State
- homo-dimer
- Ligands
- 18 x SO4: SULFATE ION(Non-functional Binders)
- 2 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)
- 2 x CIT: CITRIC ACID(Non-functional Binders)
- 2 x GTA: P1-7-METHYLGUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Egloff, M.P. et al., Structural and functional analysis of methylation and 5'-RNA sequence requirements of short capped RNAs by the methyltransferase domain of dengue virus NS5. J.Mol.Biol. (2007)
- Release Date
- 2007-08-28
- Peptides
- type II methyltransferase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A