- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-dimer
- Ligands
- 14 x SO4: SULFATE ION(Non-functional Binders)
- 2 x G1G: 7-METHYL-GUANOSINE-5'-TRIPHOSPHATE-5'-(2'-O-METHYL)-GUANOSINE(Non-covalent)
G1G.8: 14 residues within 4Å:- Chain A: K.23, L.26, N.27, L.29, K.31, F.34, K.38, S.159, S.160, P.161, S.223
- Chain B: P.117, G.118
- Ligands: SO4.5
17 PLIP interactions:17 interactions with chain A- Hydrogen bonds: A:K.23, A:K.23, A:N.27, A:N.27, A:N.27, A:L.29, A:L.29, A:L.29, A:K.31, A:S.159, A:S.223
- Water bridges: A:S.159, A:S.159, A:S.159
- Salt bridges: A:K.38
- pi-Stacking: A:F.34, A:F.34
G1G.21: 14 residues within 4Å:- Chain A: P.117, G.118
- Chain B: K.23, L.26, N.27, L.29, K.31, F.34, K.38, S.159, S.160, P.161, S.223
- Ligands: SO4.18
17 PLIP interactions:17 interactions with chain B- Hydrogen bonds: B:K.23, B:K.23, B:N.27, B:N.27, B:N.27, B:L.29, B:L.29, B:L.29, B:K.31, B:S.159, B:S.223
- Water bridges: B:S.159, B:S.159, B:S.159
- Salt bridges: B:K.38
- pi-Stacking: B:F.34, B:F.34
- 2 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)
SAH.9: 19 residues within 4Å:- Chain A: S.65, G.67, G.90, C.91, G.92, G.95, W.96, T.113, K.114, H.119, V.139, D.140, V.141, F.142, D.155, I.156
- Ligands: SO4.1, SO4.2, CIT.10
14 PLIP interactions:14 interactions with chain A- Hydrogen bonds: A:S.65, A:G.94, A:G.95, A:W.96, A:W.96, A:W.96, A:T.113, A:K.114, A:D.140, A:V.141
- Water bridges: A:R.93, A:S.97, A:K.114, A:G.115
SAH.22: 19 residues within 4Å:- Chain B: S.65, G.67, G.90, C.91, G.92, G.95, W.96, T.113, K.114, H.119, V.139, D.140, V.141, F.142, D.155, I.156
- Ligands: SO4.14, SO4.15, CIT.23
17 PLIP interactions:17 interactions with chain B- Hydrogen bonds: B:S.65, B:G.94, B:G.95, B:W.96, B:W.96, B:W.96, B:T.113, B:K.114, B:H.119, B:D.140, B:D.140, B:V.141, B:D.155
- Water bridges: B:R.93, B:S.97, B:K.114, B:G.115
- 2 x CIT: CITRIC ACID(Non-functional Binders)
CIT.10: 9 residues within 4Å:- Chain A: K.114, D.140, F.142, R.172
- Chain B: V.165, G.168, R.169, R.172
- Ligands: SAH.9
15 PLIP interactions:8 interactions with chain A, 7 interactions with chain B- Hydrophobic interactions: A:F.142, A:F.142
- Hydrogen bonds: A:D.140, B:R.172, B:R.172
- Water bridges: A:K.114, A:K.114, A:R.172, B:R.169, B:R.169
- Salt bridges: A:K.114, A:R.172, B:R.169, B:R.172, B:R.172
CIT.23: 9 residues within 4Å:- Chain A: V.165, G.168, R.169, R.172
- Chain B: K.114, D.140, F.142, R.172
- Ligands: SAH.22
15 PLIP interactions:8 interactions with chain B, 7 interactions with chain A- Hydrophobic interactions: B:F.142, B:F.142
- Hydrogen bonds: B:D.140, A:R.172, A:R.172
- Water bridges: B:K.114, B:K.114, B:R.172, A:R.169, A:R.169
- Salt bridges: B:K.114, B:R.172, A:R.169, A:R.172, A:R.172
- 6 x GOL: GLYCEROL(Non-functional Binders)
GOL.11: 3 residues within 4Å:- Chain A: K.39, R.66, R.221
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:K.39, A:R.66, A:R.221, A:R.221
GOL.12: 3 residues within 4Å:- Chain A: E.58, T.59, D.60
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:T.59, A:T.59, A:D.60
- Water bridges: A:E.58
GOL.13: 6 residues within 4Å:- Chain A: E.20, K.23, S.24, N.27, P.161, P.163
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.27, A:P.161
GOL.24: 3 residues within 4Å:- Chain B: K.39, R.66, R.221
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:K.39, B:R.66, B:R.221, B:R.221
GOL.25: 3 residues within 4Å:- Chain B: E.58, T.59, D.60
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:T.59, B:T.59, B:D.60
GOL.26: 6 residues within 4Å:- Chain B: E.20, K.23, S.24, N.27, P.161, P.163
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:N.27, B:P.161
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Egloff, M.P. et al., Structural and functional analysis of methylation and 5'-RNA sequence requirements of short capped RNAs by the methyltransferase domain of dengue virus NS5. J.Mol.Biol. (2007)
- Release Date
- 2007-08-28
- Peptides
- type II methyltransferase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-dimer
- Ligands
- 14 x SO4: SULFATE ION(Non-functional Binders)
- 2 x G1G: 7-METHYL-GUANOSINE-5'-TRIPHOSPHATE-5'-(2'-O-METHYL)-GUANOSINE(Non-covalent)
- 2 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)
- 2 x CIT: CITRIC ACID(Non-functional Binders)
- 6 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Egloff, M.P. et al., Structural and functional analysis of methylation and 5'-RNA sequence requirements of short capped RNAs by the methyltransferase domain of dengue virus NS5. J.Mol.Biol. (2007)
- Release Date
- 2007-08-28
- Peptides
- type II methyltransferase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A