SMTL ID : 2pq9.1

E. coli EPSPS liganded with (R)-difluoromethyl tetrahedral reaction intermediate analog

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x GG9: (3R,4S,5R)-5-[(1R)-1-CARBOXY-2,2-DIFLUORO-1-(PHOSPHONOOXY)ETHOXY]-4-HYDROXY-3-(PHOSPHONOOXY)CYCLOHEX-1-ENE-1-CARBOXYLIC ACID(Non-covalent)

GG9.1: 21 residues within 4Å: Chain A: K.22, S.23, R.27, N.94, A.95, G.96, T.97, R.124, S.169, S.170, Q.171, S.197, Y.200, D.313, N.336, K.340, E.341, R.344, H.385, R.386, K.411 28 PLIP interactions: 28 interactions with chain A Hydrophobic interactions: A:Y.200 Hydrogen bonds: A:K.22, A:S.23, A:G.96, A:T.97, A:S.170, A:Q.171, A:Q.171, A:Q.171, A:S.197, A:S.197, A:S.197, A:N.336, A:K.340, A:K.340 Water bridges: A:R.100, A:S.169, A:K.411 Salt bridges: A:K.22, A:K.22, A:R.27, A:R.124, A:K.340, A:R.344, A:H.385, A:R.386, A:K.411, A:K.411

14 x FMT: FORMIC ACID(Non-functional Binders)

FMT.2: 4 residues within 4Å: Chain A: K.373, L.374, S.397, D.398 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.374, A:D.398, A:D.398, A:D.398 FMT.3: 3 residues within 4Å: Chain A: A.380, T.381, Y.382 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.381, A:Y.382 FMT.4: 3 residues within 4Å: Chain A: T.5, F.376, T.402 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.402, A:T.402 FMT.5: 4 residues within 4Å: Chain A: T.58, V.62, S.63, Y.64 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.58, A:Y.64 FMT.6: 4 residues within 4Å: Chain A: R.298, E.300, L.301, F.324 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.298, A:L.301, A:F.324 Water bridges: A:R.298, A:R.298 FMT.7: 4 residues within 4Å: Chain A: T.65, L.66, S.67, R.72 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.65, A:R.72 FMT.8: 3 residues within 4Å: Chain A: D.13, G.14, T.259 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.14, A:T.15, A:K.261 FMT.9: 4 residues within 4Å: Chain A: P.199, G.272, R.275, H.310 No protein-ligand interaction detected (PLIP) FMT.10: 2 residues within 4Å: Chain A: Y.335, H.363 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.363 FMT.11: 3 residues within 4Å: Chain A: R.134, L.135, G.137 3 PLIP interactions: 3 interactions with chain A Water bridges: A:L.135, A:G.136, A:G.136 FMT.12: 4 residues within 4Å: Chain A: P.19, F.413, P.414, D.415 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.415 Water bridges: A:D.415, A:D.415 FMT.13: 3 residues within 4Å: Chain A: N.43, T.263, G.264 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.263 Water bridges: A:N.43, A:N.43, A:G.241 FMT.14: 5 residues within 4Å: Chain A: T.328, E.358, E.360, R.367, T.369 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.369, A:T.369 FMT.15: 4 residues within 4Å: Chain A: D.48, H.52, N.94, E.118 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.48, A:D.48, A:N.94, A:N.94, A:E.118

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Funke, T. et al., Differential inhibition of class I and class II 5-enolpyruvylshikimate-3-phosphate synthases by tetrahedral reaction intermediate analogues. Biochemistry (2007)

Release Date

2008-03-11

Peptides

3-phosphoshikimate 1-carboxyvinyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

3-phosphoshikimate 1-carboxyvinyltransferase

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