SMTL ID : 2qcc.1

Crystal structure of the orotidine-5'-monophosphate decarboxylase domain of human UMP synthase, apo form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: Y.212, G.230, R.231 Ligands: GOL.2 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:G.230, A:R.231 Water bridges: A:D.39, A:G.198, A:G.198, A:G.198, A:V.199, A:R.231, A:G.232 Salt bridges: A:R.231 SO4.3: 4 residues within 4Å: Chain B: Y.212, G.230, R.231 Ligands: GOL.4 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:Y.212, B:G.230, B:R.231 Water bridges: B:G.198, B:G.198, B:G.198, B:V.199, B:G.232 Salt bridges: B:R.231

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 9 residues within 4Å: Chain A: S.37, D.39, K.61, H.63, D.92, I.228 Chain B: D.97, T.101 Ligands: SO4.1 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:S.37, A:K.61, A:H.63, A:K.94, B:D.97 GOL.4: 9 residues within 4Å: Chain A: D.97, T.101 Chain B: S.37, D.39, K.61, H.63, D.92, K.94 Ligands: SO4.3 7 PLIP interactions: 4 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:S.37, B:D.39, B:K.61, B:K.94, A:D.97, A:T.101 Water bridges: A:I.98

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wittmann, J.G. et al., Structures of the human orotidine-5'-monophosphate decarboxylase support a covalent mechanism and provide a framework for drug design. Structure (2008)

Release Date

2007-11-06

Peptides

Orotidine 5'- phosphate decarboxylase (OMPdecase): AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Orotidine 5'- phosphate decarboxylase (OMPdecase)

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