- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 0.99 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x OMP: OROTIDINE-5'-MONOPHOSPHATE(Non-covalent)
- 2 x U: URIDINE-5'-MONOPHOSPHATE(Non-covalent)
U.2: 18 residues within 4Å:- Chain A: S.37, D.39, K.61, H.63, D.92, K.94, M.151, S.152, P.197, Q.210, Y.212, I.228, G.230, R.231
- Chain B: D.97, I.98, T.101
- Ligands: OMP.1
38 PLIP interactions:20 interactions with chain A, 18 interactions with chain B- Hydrophobic interactions: A:P.197, B:P.197
- Hydrogen bonds: A:S.37, A:D.39, A:D.39, A:K.61, A:D.92, A:T.101, A:S.152, A:S.152, A:S.152, A:Q.210, A:Y.212, A:Y.212, A:Y.212, A:G.230, A:R.231, B:S.37, B:D.39, B:K.61, B:T.101, B:T.101, B:S.152, B:S.152, B:S.152, B:Q.210, B:Y.212, B:Y.212, B:G.230, B:R.231
- Water bridges: A:G.198, A:G.198, A:Q.200, B:G.198, B:G.198, B:Q.200
- Salt bridges: A:R.231, B:R.231
U.11: 18 residues within 4Å:- Chain A: D.97, I.98, T.101
- Chain B: S.37, D.39, K.61, H.63, D.92, K.94, M.151, S.152, P.197, Q.210, Y.212, I.228, G.230, R.231
- Ligands: OMP.10
Protein-ligand interaction information (PLIP) not available- 2 x GOL: GLYCEROL(Non-functional Binders)
- 12 x SO4: SULFATE ION(Non-functional Binders)
SO4.4: 2 residues within 4Å:- Chain A: T.154, G.209
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:T.154
- Water bridges: A:G.209, A:G.209
SO4.5: 2 residues within 4Å:- Chain A: R.15, E.175
2 PLIP interactions:2 interactions with chain A- Water bridges: A:R.15
- Salt bridges: A:R.15
SO4.6: 2 residues within 4Å:- Chain A: N.213, R.222
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:N.213
- Water bridges: A:Q.211, A:Q.211
- Salt bridges: A:R.222
SO4.7: 2 residues within 4Å:- Chain A: G.160, R.164
2 PLIP interactions:2 interactions with chain A- Water bridges: A:G.160
- Salt bridges: A:R.164
SO4.8: 3 residues within 4Å:- Chain A: S.128, K.132, H.173
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:S.128
- Water bridges: A:E.172, A:E.172
- Salt bridges: A:K.132, A:H.173
SO4.9: 2 residues within 4Å:- Chain A: R.164, R.168
3 PLIP interactions:3 interactions with chain A- Water bridges: A:R.168, A:R.168
- Salt bridges: A:R.168
SO4.13: 2 residues within 4Å:- Chain B: T.154, G.209
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:T.154, B:T.154
- Water bridges: B:G.209, B:G.209
SO4.14: 2 residues within 4Å:- Chain B: R.15, E.175
2 PLIP interactions:2 interactions with chain B- Water bridges: B:R.15
- Salt bridges: B:R.15
SO4.15: 2 residues within 4Å:- Chain B: N.213, R.222
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:N.213
- Water bridges: B:Q.211, B:Q.211
- Salt bridges: B:R.222
SO4.16: 2 residues within 4Å:- Chain B: G.160, R.164
2 PLIP interactions:2 interactions with chain B- Water bridges: B:G.160
- Salt bridges: B:R.164
SO4.17: 3 residues within 4Å:- Chain B: S.128, K.132, H.173
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:S.128
- Water bridges: B:E.172, B:H.173
- Salt bridges: B:K.132, B:H.173
SO4.18: 2 residues within 4Å:- Chain B: R.164, R.168
3 PLIP interactions:3 interactions with chain B- Water bridges: B:R.168, B:R.168
- Salt bridges: B:R.168
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Rindfleisch, S. et al., Ground-state destabilization by electrostatic repulsion is not a driving force in orotidine-5-monophosphate decarboxylase catalysis. Nat Catal (2022)
- Release Date
- 2021-11-03
- Peptides
- Uridine 5'-monophosphate synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 0.99 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x OMP: OROTIDINE-5'-MONOPHOSPHATE(Non-covalent)
- 2 x U: URIDINE-5'-MONOPHOSPHATE(Non-covalent)
- 2 x GOL: GLYCEROL(Non-functional Binders)
- 12 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Rindfleisch, S. et al., Ground-state destabilization by electrostatic repulsion is not a driving force in orotidine-5-monophosphate decarboxylase catalysis. Nat Catal (2022)
- Release Date
- 2021-11-03
- Peptides
- Uridine 5'-monophosphate synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A