Toggle navigation
Modelling
myWorkspace
Alignment Mode
User Template Mode
DeepView Project Mode
Modelling API
Template Library
Repository
SWISS-MODEL Repository
Repository API
3D-Beacons API
Annotation Projects
TBvar3D
Tools
Structure Assessment
Structure Comparison
QMEAN
Documentation
SWISS-MODEL
Examples
Video Tutorial
New Features
SWISS-MODEL Repository
QMEAN
Structure Assessment
Structure Comparison
TBvar3D
Protein Structure Course
References
Log in
Create Account
SMTL ID : 2qcn.1
Covalent complex of the orotidine-5'-monophosphate decarboxylase domain of human UMP synthase with 6-iodo-UMP
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 1.85 Å
Oligo State
homo-dimer
Ligands
1 x
SO4
:
SULFATE ION
(Non-functional Binders)
SO4.1:
3 residues within 4Å:
Chain A:
G.8
,
A.9
,
E.12
1
PLIP interactions
:
1 interactions with chain A
Hydrogen bonds:
A:E.12
2 x
U5P
:
URIDINE-5'-MONOPHOSPHATE
(Covalent)
U5P.2:
17 residues within 4Å:
Chain A:
S.37
,
D.39
,
K.61
,
H.63
,
D.92
,
K.94
,
M.151
,
S.152
,
P.197
,
Q.210
,
Y.212
,
V.229
,
G.230
,
R.231
Chain B:
D.97
,
I.98
,
T.101
17
PLIP interactions
:
2 interactions with chain B
,
15 interactions with chain A
Hydrogen bonds:
B:D.97
,
B:T.101
,
A:S.37
,
A:K.61
,
A:D.92
,
A:K.94
,
A:S.152
,
A:S.152
,
A:S.152
,
A:Q.210
,
A:G.230
,
A:R.231
Hydrophobic interactions:
A:P.197
Water bridges:
A:G.198
,
A:V.199
,
A:G.232
Salt bridges:
A:R.231
U5P.4:
16 residues within 4Å:
Chain A:
D.97
,
I.98
,
T.101
Chain B:
S.37
,
D.39
,
K.61
,
H.63
,
D.92
,
K.94
,
M.151
,
S.152
,
P.197
,
Q.210
,
Y.212
,
G.230
,
R.231
17
PLIP interactions
:
15 interactions with chain B
,
2 interactions with chain A
Hydrophobic interactions:
B:P.197
Hydrogen bonds:
B:S.37
,
B:K.61
,
B:D.92
,
B:K.94
,
B:S.152
,
B:S.152
,
B:S.152
,
B:Q.210
,
B:G.230
,
B:R.231
,
A:D.97
,
A:T.101
Water bridges:
B:G.198
,
B:V.199
,
B:G.232
Salt bridges:
B:R.231
2 x
GOL
:
GLYCEROL
(Non-functional Binders)
GOL.3:
6 residues within 4Å:
Chain A:
K.22
,
A.82
,
K.83
,
F.87
,
L.88
,
D.118
6
PLIP interactions
:
6 interactions with chain A
Hydrogen bonds:
A:K.22
,
A:A.82
,
A:K.83
,
A:K.83
,
A:F.87
Water bridges:
A:D.118
GOL.5:
6 residues within 4Å:
Chain B:
K.22
,
A.82
,
K.83
,
F.87
,
L.88
,
D.118
3
PLIP interactions
:
3 interactions with chain B
Hydrogen bonds:
B:K.22
,
B:A.82
,
B:D.118
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Wittmann, J.G. et al., Structures of the human orotidine-5'-monophosphate decarboxylase support a covalent mechanism and provide a framework for drug design. Structure (2008)
Release Date
2007-11-13
Peptides
Uridine 5'-monophosphate synthase:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
Export Alignment
FASTA format
Clustal Format
PNG Image
Secondary Structure
None
DSSP
PSIPRED
SSpro
Colour Scheme
Fade Mismatches
Enhance Mismatches
Chain
Unique Chain
Rainbow
2° Structure
Bfactor
Bfactor Range
SOA
Entropy
Clustal
Hydrophobic
Size
Charged
Polar
Proline
Ser/Thr
Cysteine
Aliphatic
Aromatic
No Colour
Background
3D Viewer
NGL
PV
2D
FASTA
Multi FASTA
ClustalW
PNG
Uridine 5'-monophosphate synthase
Toggle Identical (AB)
Related Entries With Identical Sequence
2qcc.1
|
2qcd.1
|
2qce.1
|
2qcg.1
|
2qch.1
|
3ewz.1
|
3ewz.2
|
3ex1.1
|
3ex2.1
|
3ex3.1
|
3ex4.1
|
3l0k.1
|
3l0n.1
|
6yvk.1
|
6yvl.1
|
6yvm.1
|
6yvn.1
|
6yvo.1
|
6ywt.1
|
6ywu.1
|
6zwy.1
|
6zwz.1
|
6zx0.1
|
6zx1.1
|
6zx2.1
|
6zx3.1
|
7am9.1
|
7otu.1
Cartoon
Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog
Background
Transparent
Resolution
Low
Medium
High
Extreme