SMTL ID : 3ewz.1 (1 other biounit)

human orotidyl-5'-monophosphate decarboxylase in complex with 5-cyano-UMP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

homo-dimer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: R.231, S.235 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Water bridges: B:N.100, B:N.100, A:R.231 Hydrogen bonds: A:S.235

4 x CNU: 5-CYANO-URIDINE-5'-MONOPHOSPHATE(Non-covalent)(Non-functional Binders)

CNU.2: 19 residues within 4Å: Chain A: S.37, D.39, K.61, H.63, D.92, N.121, I.148, M.151, S.152, I.181, P.197, Q.210, Y.212, V.229, G.230, R.231 Chain B: D.97, I.98, T.101 19 PLIP interactions: 18 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:P.197 Hydrogen bonds: A:S.37, A:D.39, A:K.61, A:H.63, A:N.121, A:S.152, A:S.152, A:S.152, A:Q.210, A:Y.212, A:Y.212, A:G.230, A:R.231, B:T.101 Water bridges: A:G.198, A:G.198, A:G.232 Salt bridges: A:R.231 CNU.3: 19 residues within 4Å: Chain A: D.97, I.98, T.101 Chain B: S.37, D.39, K.61, H.63, D.92, N.121, I.148, M.151, S.152, I.181, P.197, Q.210, Y.212, V.229, G.230, R.231 20 PLIP interactions: 18 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:P.197 Hydrogen bonds: B:S.37, B:S.37, B:K.61, B:N.121, B:S.152, B:S.152, B:S.152, B:Q.210, B:Y.212, B:Y.212, B:Y.212, B:G.230, B:R.231, A:T.101, A:T.101 Water bridges: B:G.198, B:G.198, B:G.232 Salt bridges: B:R.231 CNU.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) CNU.5: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Heinrich, D. et al., Lys314 is a nucleophile in non-classical reactions of orotidine-5'-monophosphate decarboxylase. Chemistry (2009)

Release Date

2009-04-07

Peptides

Orotidine-5'-phosphate decarboxylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Orotidine-5'-phosphate decarboxylase

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