SMTL ID : 3l0k.1

Human orotidyl-5'-monophosphate decarboxylase in complex with 6-acetyl-UMP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.34 Å

Oligo State

homo-dimer

Ligands

2 x 6AU: 6-acetyluridine 5'-phosphate(Non-covalent)

6AU.1: 20 residues within 4Å: Chain A: S.37, D.39, K.61, H.63, D.92, K.94, N.121, M.151, S.152, I.181, P.197, Q.210, Y.212, I.228, V.229, G.230, R.231 Chain B: D.97, I.98, T.101 23 PLIP interactions: 21 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:K.61, A:P.197, A:P.197, A:I.228 Hydrogen bonds: A:S.37, A:D.39, A:K.61, A:K.94, A:N.121, A:S.152, A:S.152, A:S.152, A:Q.210, A:Y.212, A:Y.212, A:Y.212, A:G.230, A:R.231, B:T.101, B:T.101 Water bridges: A:G.198, A:G.198 Salt bridges: A:R.231 6AU.3: 20 residues within 4Å: Chain A: D.97, I.98, T.101 Chain B: S.37, D.39, K.61, H.63, D.92, K.94, N.121, M.151, S.152, I.181, P.197, Q.210, Y.212, I.228, V.229, G.230, R.231 23 PLIP interactions: 22 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:K.61, B:P.197, B:P.197, B:I.228 Hydrogen bonds: B:S.37, B:D.39, B:K.61, B:K.94, B:N.121, B:S.152, B:S.152, B:S.152, B:Q.210, B:Y.212, B:Y.212, B:G.230, B:R.231, A:T.101 Water bridges: B:G.198, B:G.198, B:Q.200, B:G.232 Salt bridges: B:R.231

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: G.8, A.9, E.12, Q.28 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.6, A:S.6, A:Q.28

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Heinrich, D. et al., Lys314 is a nucleophile in non-classical reactions of orotidine-5'-monophosphate decarboxylase. Chemistry (2009)

Release Date

2010-01-26

Peptides

Uridine 5'-monophosphate synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Uridine 5'-monophosphate synthase

Related Entries With Identical Sequence