SMTL ID : 2w26.1

Factor Xa in complex with BAY59-7939

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.08 Å

Oligo State

hetero-1-1-mer

Ligands

1 x RIV: 5-chloro-N-({(5S)-2-oxo-3-[4-(3-oxomorpholin-4-yl)phenyl]-1,3-oxazolidin-5-yl}methyl)thiophene-2-carboxamide

RIV.1: 19 residues within 4Å: Chain A: K.82, E.83, T.84, Y.85, F.162, D.179, A.180, C.181, Q.182, S.185, V.203, W.205, G.206, E.207, G.208, C.209, G.216, I.217, Y.218 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.162, A:W.205, A:W.205 Hydrogen bonds: A:G.208, A:G.208 pi-Stacking: A:Y.85

2 x CA: CALCIUM ION(Non-covalent)

CA.2: 4 residues within 4Å: Chain A: D.56, N.58, Q.61, E.66 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.56, A:N.58, A:Q.61, A:E.66, H2O.1 CA.3: 4 residues within 4Å: Chain A: Y.173, D.174, R.211, K.214 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:Y.173, A:D.174, A:R.211, A:K.214

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Roehrig, S. et al., Discovery of the Novel Antithrombotic Agent 5-Chloro-N-({(5S)-2-Oxo-3- [4-(3-Oxomorpholin-4-Yl)Phenyl]-1,3-Oxazolidin-5-Yl}Methyl)Thiophene-2- Carboxamide (Bay 59-7939): An Oral, Direct Factor Xa Inhibitor. J.Med.Chem. (2005)

Release Date

2008-11-11

Peptides

ACTIVATED FACTOR XA HEAVY CHAIN: A
ACTIVATED FACTOR XA HEAVY CHAIN: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

ACTIVATED FACTOR XA HEAVY CHAIN

ACTIVATED FACTOR XA HEAVY CHAIN

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