SMTL ID : 2x2l.1

Crystal Structure of phosphorylated RET tyrosine kinase domain with inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

8 x FMT: FORMIC ACID(Non-functional Binders)

FMT.1: 6 residues within 4Å: Chain A: R.22, C.95, D.98, G.99, P.100, L.102 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.97, A:D.98, A:P.100 FMT.2: 6 residues within 4Å: Chain A: R.174, L.196, R.198, K.208, G.212, R.213 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.174, A:R.174, A:R.213, A:I.214 FMT.3: 8 residues within 4Å: Chain A: Q.211, L.224, F.225, H.227 Chain B: G.1, P.2, L.3, S.4 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:Q.211, A:L.224, B:G.1, B:L.3, B:S.4 FMT.4: 5 residues within 4Å: Chain A: K.48, R.50, K.90, L.91, Y.92 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.50, A:R.50, A:K.90 FMT.6: 6 residues within 4Å: Chain B: R.22, C.95, D.98, G.99, P.100, L.102 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.97, B:D.98, B:P.100 FMT.7: 6 residues within 4Å: Chain B: R.174, L.196, R.198, K.208, G.212, R.213 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.174, B:R.174, B:R.213, B:I.214 FMT.8: 8 residues within 4Å: Chain A: G.1, P.2, L.3, S.4 Chain B: Q.211, L.224, F.225, H.227 5 PLIP interactions: 2 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:Q.211, B:L.224, A:G.1, A:L.3, A:S.4 FMT.9: 5 residues within 4Å: Chain B: K.48, R.50, K.90, L.91, Y.92 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.50, B:R.50, B:K.90

2 x X2L: (3Z)-5-AMINO-3-[(4-METHOXYPHENYL)METHYLIDENE]-1,3-DIHYDRO-2H-INDOL-2-ONE(Non-covalent)

X2L.5: 12 residues within 4Å: Chain A: L.31, V.39, A.57, V.105, E.106, Y.107, A.108, K.109, Y.110, G.111, L.182, D.193 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.31, A:L.31, A:V.39, A:V.105, A:Y.107, A:L.182, A:L.182 Hydrogen bonds: A:E.106, A:A.108, A:D.193 X2L.10: 12 residues within 4Å: Chain B: L.31, V.39, A.57, V.105, E.106, Y.107, A.108, K.109, Y.110, G.111, L.182, D.193 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:L.31, B:L.31, B:V.39, B:V.105, B:Y.107, B:L.182, B:L.182 Hydrogen bonds: B:E.106, B:A.108, B:D.193

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mologni, L. et al., Synthesis, structure-activity relationship and crystallographic studies of 3-substituted indolin-2-one RET inhibitors. Bioorg. Med. Chem. (2010)

Release Date

2010-02-09

Peptides

PROTO-ONCOGENE TYROSINE-PROTEIN KINASE RECEPTOR RET: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

PROTO-ONCOGENE TYROSINE-PROTEIN KINASE RECEPTOR RET

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