SMTL ID : 2zd8.1

SHV-1 class A beta-lactamase complexed with meropenem

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.05 Å

Oligo State

monomer

Ligands

2 x MA4: CYCLOHEXYL-HEXYL-BETA-D-MALTOSIDE(Non-covalent)

MA4.1: 14 residues within 4Å: Chain A: I.196, V.199, P.201, I.206, A.222, L.224, V.234, I.236, I.252, A.253, A.257, I.260, E.261 Ligands: MA4.2 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.196, A:I.206, A:A.222, A:L.224, A:V.234, A:I.236, A:I.252 Hydrogen bonds: A:E.261 MA4.2: 7 residues within 4Å: Chain A: L.195, I.196, T.210, R.218, N.249, I.252 Ligands: MA4.1 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.195, A:L.195, A:I.196, A:T.210, A:I.252

1 x MER: (4R,5S)-3-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-5-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-4-methyl-4,5-d ihydro-1H-pyrrole-2-carboxylic acid(Covalent)

MER.3: 12 residues within 4Å: Chain A: M.44, S.45, K.48, Y.80, S.105, N.107, E.141, T.210, G.211, A.212, R.218, M.245 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:Y.80 Hydrogen bonds: A:S.45, A:K.48, A:N.107, A:T.210, A:A.212 Water bridges: A:E.141, A:E.141, A:T.210, A:R.218 Salt bridges: A:R.218

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nukaga, M. et al., Inhibition of class A beta-lactamases by carbapenems: crystallographic observation of two conformations of meropenem in SHV-1. J.Am.Chem.Soc. (2008)

Release Date

2008-09-30

Peptides

Beta-lactamase SHV-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-lactamase SHV-1

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