SMTL ID : 5ee8.1

Crystal structure of S02030 boronic acid inhibitor complexed to SHV-1 beta-lactamase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.54 Å

Oligo State

monomer

Ligands

1 x ZXM: 1-{(2R)-2-(dihydroxyboranyl)-2-[(thiophen-2-ylacetyl)amino]ethyl}-1H-1,2,3-triazole-4-carboxylic acid(Covalent)

ZXM.1: 16 residues within 4Å: Chain A: M.44, S.45, K.48, D.79, S.105, N.107, E.141, T.142, L.144, N.145, V.191, T.210, G.211, A.212, E.214, R.218 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:N.145, A:E.214 Hydrogen bonds: A:S.45, A:S.105, A:N.107, A:N.145, A:N.145, A:T.210, A:T.210, A:A.212, A:A.212, A:A.212 Water bridges: A:R.218, A:R.218 Salt bridges: A:R.218

2 x MA4: CYCLOHEXYL-HEXYL-BETA-D-MALTOSIDE(Non-covalent)

MA4.2: 15 residues within 4Å: Chain A: I.196, V.199, L.200, P.201, I.206, I.220, A.222, V.234, I.236, I.252, A.253, A.257, I.260, E.261 Ligands: MA4.3 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:I.196, A:V.199, A:L.200, A:I.206, A:I.220, A:A.222, A:V.234, A:I.236, A:I.252 Hydrogen bonds: A:E.261 MA4.3: 12 residues within 4Å: Chain A: S.1, L.195, T.210, R.218, N.249, Q.250, I.252, A.253, G.254, A.257, E.261 Ligands: MA4.2 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:T.210, A:Q.250, A:I.252 Hydrogen bonds: A:S.1, A:S.1, A:Q.250 Water bridges: A:A.258, A:A.258

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nguyen, N.Q. et al., Crystal Structures of KPC-2 and SHV-1 beta-Lactamases in Complex with the Boronic Acid Transition State Analog S02030. Antimicrob.Agents Chemother. (2016)

Release Date

2016-01-27

Peptides

Beta-lactamase SHV-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-lactamase SHV-1

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