SMTL ID : 3b9s.1

Macrophage Migration Inhibitory Factor (MIF) complexed with Inhibitor, 4-IPP.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-trimer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 3 residues within 4Å: Chain A: T.112, F.113, A.114 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.112 GOL.6: 4 residues within 4Å: Chain B: G.68, G.69, A.70, Q.71 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.69, B:A.70, B:Q.71 GOL.9: 2 residues within 4Å: Chain C: F.113, A.114 No protein-ligand interaction detected (PLIP)

3 x RW1: 4-phenylpyrimidine(Covalent)

RW1.2: 8 residues within 4Å: Chain A: P.1, M.2, Y.36, H.62, V.106, F.113 Chain B: Y.95, N.97 6 PLIP interactions: 3 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:H.62, A:V.106, B:Y.95, B:Y.95, B:Y.95 Water bridges: A:I.64 RW1.7: 8 residues within 4Å: Chain B: P.1, M.2, Y.36, H.62, V.106, F.113 Chain C: Y.95, N.97 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain C Hydrophobic interactions: B:H.62, B:V.106, C:Y.95, C:Y.95 RW1.10: 8 residues within 4Å: Chain A: Y.95, N.97 Chain C: P.1, M.2, K.32, Y.36, H.62, V.106 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain C Hydrophobic interactions: A:Y.95, A:Y.95, C:H.62, C:V.106 Water bridges: C:I.64

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 1 residues within 4Å: Chain A: R.86 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.86 SO4.4: 2 residues within 4Å: Chain A: P.15, D.16 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.16, A:D.16 Water bridges: A:V.14 SO4.5: 5 residues within 4Å: Chain A: A.84, R.88, I.89, S.90, P.91 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.88 SO4.8: 2 residues within 4Å: Chain B: E.85, R.86 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.85 Salt bridges: B:R.86

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Winner, M. et al., A novel, macrophage migration inhibitory factor suicide substrate inhibits motility and growth of lung cancer cells. Cancer Res. (2008)

Release Date

2008-09-23

Peptides

Macrophage Migration Inhibitory Factor: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Macrophage Migration Inhibitory Factor

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