SMTL ID : 6fvh.1

Macrophage Migration Inhibitory Factor (MIF) with Covalently Bound PITC

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

homo-trimer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: G.68, G.69, A.70, Q.71 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.69, A:A.70, A:Q.71, A:Q.71 SO4.3: 2 residues within 4Å: Chain A: E.85, R.86 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.86, A:R.86 Salt bridges: A:R.86 SO4.4: 2 residues within 4Å: Chain B: A.70, R.73 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.73 SO4.5: 4 residues within 4Å: Chain B: G.68, G.69, A.70, Q.71 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:G.68, B:G.69, B:A.70, B:Q.71, B:Q.71 SO4.7: 3 residues within 4Å: Chain B: Q.35, Y.36, W.108 No protein-ligand interaction detected (PLIP) SO4.9: 1 residues within 4Å: Chain C: R.86 3 PLIP interactions: 3 interactions with chain C Water bridges: C:E.85, C:E.85 Salt bridges: C:R.86

3 x 0FI: N-phenylthioformamide(Covalent)

0FI.2: 9 residues within 4Å: Chain A: P.1, M.2, Y.36, H.62, S.63, I.64, V.106 Chain B: Y.95, N.97 6 PLIP interactions: 4 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:H.62, A:I.64, A:V.106, A:V.106 Hydrogen bonds: B:Y.95 pi-Stacking: B:Y.95 0FI.6: 10 residues within 4Å: Chain B: P.1, M.2, Y.36, H.62, S.63, I.64, M.101, V.106 Chain C: Y.95, N.97 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain C Hydrophobic interactions: B:H.62, B:V.106, B:V.106 Hydrogen bonds: C:Y.95 pi-Stacking: C:Y.95 0FI.8: 6 residues within 4Å: Chain A: Y.95 Chain C: P.1, K.32, Y.36, I.64, F.113 6 PLIP interactions: 2 interactions with chain A, 4 interactions with chain C Hydrophobic interactions: A:Y.95, A:Y.95, C:I.64, C:F.113 Hydrogen bonds: C:P.1 pi-Stacking: C:Y.36

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sokolov, A.V. et al., Structural Study of the Complex Formed by Ceruloplasmin and Macrophage Migration Inhibitory Factor. Biochemistry Mosc. (2018)

Release Date

2018-06-06

Peptides

Macrophage migration inhibitory factor: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Macrophage migration inhibitory factor

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