SMTL ID : 3bi5.1

Crystal structures of fms1 in complex with its inhibitors

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 37 residues within 4Å: Chain A: I.14, G.15, G.17, I.18, A.19, L.38, E.39, A.40, R.41, G.46, R.47, L.48, I.61, G.62, A.63, S.64, W.65, H.67, C.221, E.222, V.223, T.252, V.253, P.254, G.270, L.294, W.440, Y.445, A.449, Y.450, G.478, E.479, G.487, C.488, A.489, A.492 Ligands: DIA.2 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:W.440, A:A.449, A:Y.450 Hydrogen bonds: A:A.19, A:A.40, A:R.41, A:R.41, A:R.47, A:S.64, A:W.65, A:W.65, A:V.223, A:V.223, A:E.479, A:G.487, A:A.489 Water bridges: A:I.18, A:I.18, A:G.20, A:G.46 Salt bridges: A:R.47, A:R.47 pi-Stacking: A:Y.445 FAD.3: 37 residues within 4Å: Chain B: I.14, G.15, A.16, G.17, I.18, A.19, L.38, E.39, A.40, R.41, G.46, R.47, I.61, G.62, A.63, S.64, W.65, H.67, C.221, E.222, V.223, T.252, V.253, P.254, G.270, L.294, W.440, Y.445, A.449, Y.450, G.478, E.479, G.487, C.488, A.489, A.492 Ligands: DIA.4 19 PLIP interactions: 19 interactions with chain B Hydrophobic interactions: B:W.440, B:Y.450 Hydrogen bonds: B:A.16, B:A.19, B:A.40, B:R.41, B:R.47, B:S.64, B:W.65, B:W.65, B:V.223, B:V.223, B:E.479, B:G.487, B:A.489 Water bridges: B:G.20 Salt bridges: B:R.47, B:R.47 pi-Stacking: B:Y.445

2 x DIA: OCTANE 1,8-DIAMINE(Non-covalent)

DIA.2: 7 residues within 4Å: Chain A: H.67, F.97, L.173, W.174, F.359, Y.450 Ligands: FAD.1 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:W.174, A:W.174, A:F.359 Hydrogen bonds: A:Y.450 DIA.4: 9 residues within 4Å: Chain B: H.67, L.173, W.174, F.359, L.375, Y.450, G.487, C.488 Ligands: FAD.3 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:W.174, B:L.375 Hydrogen bonds: B:W.174, B:G.487

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, Q. et al., Crystal structures of fms1 in complex with its inhibitors. To be Published

Release Date

2008-01-01

Peptides

Polyamine oxidase FMS1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Polyamine oxidase FMS1

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