SMTL ID : 3bm6.1

AmpC beta-lactamase in complex with a p.carboxyphenylboronic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x C9P: 4-(dihydroxyboranyl)-2-({[4-(phenylsulfonyl)thiophen-2-yl]sulfonyl}amino)benzoic acid(Covalent)

C9P.1: 14 residues within 4Å: Chain A: G.60, S.61, L.116, Q.117, Y.147, N.149, V.208, Y.218, N.286, L.290, G.314, A.315, T.316, N.340 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.116, A:Y.218, A:L.290 Hydrogen bonds: A:S.61, A:Q.117, A:N.149, A:A.315 Water bridges: A:G.317 C9P.2: 12 residues within 4Å: Chain B: G.60, S.61, Q.117, Y.147, N.149, Y.218, N.286, L.290, G.314, A.315, T.316, N.340 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:Y.218, B:L.290 Hydrogen bonds: B:S.61, B:Q.117, B:Y.147, B:N.149, B:A.315 Water bridges: B:Y.218, B:G.317

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tondi, D. et al., Structural study of phenyl boronic acid derivatives as AmpC beta-lactamase inhibitors. Bioorg.Med.Chem.Lett. (2010)

Release Date

2009-02-17

Peptides

Beta-lactamase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Beta-lactamase

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