SMTL ID : 3cgm.1 (1 other biounit)

Crystal structure of thermophilic SlyD

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.41 Å

Oligo State

monomer

Ligands

6 x SCN: THIOCYANATE ION(Non-functional Binders)

SCN.1: 6 residues within 4Å: Chain A: L.36, I.37, Y.63, F.128 Ligands: GOL.8, GOL.9 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:I.37 SCN.2: 5 residues within 4Å: Chain A: Y.29, L.30, N.35, H.147, A.148 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.30, A:A.148 SCN.3: 3 residues within 4Å: Chain A: P.65, D.67, P.68 No protein-ligand interaction detected (PLIP) SCN.4: 1 residues within 4Å: Chain A: K.134 No protein-ligand interaction detected (PLIP) SCN.5: 2 residues within 4Å: Chain A: A.78, F.79 No protein-ligand interaction detected (PLIP) SCN.7: 2 residues within 4Å: Chain A: R.47, F.53 No protein-ligand interaction detected (PLIP)

1 x NI: NICKEL (II) ION(Non-covalent)

NI.6: 5 residues within 4Å: Chain A: H.145, H.147, H.149, H.155, H.157 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:H.145, A:H.147, A:H.149, A:H.155, A:H.157

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.8: 4 residues within 4Å: Chain A: D.23, L.27, L.36 Ligands: SCN.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.23, A:D.23 GOL.9: 6 residues within 4Å: Chain A: R.34, N.35, L.36, I.37, Y.63 Ligands: SCN.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.34, A:Y.63, A:Y.63

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Loew, C. et al., Crystal Structure Determination and Functional Characterization of the Metallochaperone SlyD from Thermus thermophilus. J.Mol.Biol. (2010)

Release Date

2009-03-10

Peptides

Peptidyl-prolyl cis-trans isomerase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peptidyl-prolyl cis-trans isomerase

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