SMTL ID : 4odo.1 (2 other biounits)

Structure of SlyD from Thermus thermophilus in complex with FK506

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

3 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.1: 1 residues within 4Å: Chain A: E.112 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.112, H2O.2, H2O.3 MG.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.3: 1 residues within 4Å: Chain A: Q.5 No protein-ligand interaction detected (PLIP)

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 5 residues within 4Å: Chain A: Y.29, L.30, N.35, H.147, A.148 Ligand excluded by PLIP

1 x FK5: 8-DEETHYL-8-[BUT-3-ENYL]-ASCOMYCIN(Non-covalent)

FK5.5: 12 residues within 4Å: Chain A: Y.13, L.15, D.23, L.27, N.35, L.36, I.37, L.40, A.62, Y.63, L.121, F.128 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:Y.13, A:L.27, A:L.27, A:L.36, A:I.37, A:L.40, A:L.121, A:F.128 Hydrogen bonds: A:Y.13, A:D.23, A:I.37 Water bridges: A:N.35, A:N.35

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Quistgaard, E.M. et al., Molecular insights into substrate recognition and catalytic mechanism of the chaperone and FKBP peptidyl-prolyl isomerase SlyD. BMC Biol. (2016)

Release Date

2015-01-14

Peptides

Peptidyl-prolyl cis-trans isomerase SlyD: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peptidyl-prolyl cis-trans isomerase SlyD

Related Entries With Identical Sequence