SMTL ID : 4odo.3 (2 other biounits)

Structure of SlyD from Thermus thermophilus in complex with FK506

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: S.77, F.79 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:S.77, H2O.1, H2O.4, H2O.4, H2O.5

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 5 residues within 4Å: Chain A: Y.29, L.30, N.35, H.147, A.148 Ligand excluded by PLIP

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: A.78, F.79, P.80, Y.92, A.93 1 PLIP interactions: 1 interactions with chain A Water bridges: A:A.78

1 x FK5: 8-DEETHYL-8-[BUT-3-ENYL]-ASCOMYCIN(Non-covalent)

FK5.4: 13 residues within 4Å: Chain A: Y.13, L.15, D.23, E.26, L.27, N.35, L.36, I.37, L.40, A.62, Y.63, L.121, F.128 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:Y.13, A:L.36, A:I.37, A:L.40, A:Y.63, A:L.121, A:F.128 Hydrogen bonds: A:Y.13, A:I.37 Water bridges: A:N.35

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Quistgaard, E.M. et al., Molecular insights into substrate recognition and catalytic mechanism of the chaperone and FKBP peptidyl-prolyl isomerase SlyD. BMC Biol. (2016)

Release Date

2015-01-14

Peptides

Peptidyl-prolyl cis-trans isomerase SlyD: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Peptidyl-prolyl cis-trans isomerase SlyD

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