SMTL ID : 3luo.2 (1 other biounit)

Crystal Structure and functional characterization of the thermophilic prolyl isomerase and chaperone SlyD

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

homo-trimer

Ligands

3 x SIN- ALA- LEU- PRO- ALA- NIT: Suc-Ala-Leu-Pro-Phe-pNA(Non-covalent)

SIN-ALA-LEU-PRO-ALA-NIT.1: 9 residues within 4Å: Chain A: Y.13, D.23, Q.24, N.35, L.36, I.37, A.62, Y.63, F.128 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.36, A:I.37, A:F.128 Hydrogen bonds: A:Y.13, A:N.35, A:N.35, A:I.37, A:Y.63 SIN-ALA-LEU-PRO-ALA-NIT.6: 9 residues within 4Å: Chain B: Y.13, D.23, Q.24, N.35, L.36, I.37, A.62, Y.63, F.128 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:L.36, B:I.37, B:F.128 Hydrogen bonds: B:Y.13, B:Y.13, B:N.35, B:N.35, B:I.37, B:Y.63 SIN-ALA-LEU-PRO-ALA-NIT.11: 9 residues within 4Å: Chain C: Y.13, D.23, Q.24, N.35, L.36, I.37, A.62, Y.63, F.128 9 PLIP interactions: 9 interactions with chain C Hydrophobic interactions: C:L.36, C:I.37, C:F.128 Hydrogen bonds: C:Y.13, C:Y.13, C:N.35, C:N.35, C:I.37, C:Y.63

12 x ZN: ZINC ION(Non-covalent)

ZN.2: 2 residues within 4Å: Chain A: E.137 Chain C: A.52 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain A Metal complexes: C:A.52, A:E.137 ZN.3: 3 residues within 4Å: Chain A: H.145, H.147, H.149 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.145, A:H.147, A:H.149, H2O.1 ZN.4: 5 residues within 4Å: Chain A: Y.29, L.30, N.35, H.147, A.148 No protein-ligand interaction detected (PLIP) ZN.5: 2 residues within 4Å: Chain A: E.49 Chain C: E.49 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.49, A:E.49 ZN.7: 2 residues within 4Å: Chain A: A.52 Chain B: E.137 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Metal complexes: B:E.137, A:A.52 ZN.8: 3 residues within 4Å: Chain B: H.145, H.147, H.149 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.145, B:H.147, B:H.149, H2O.1 ZN.9: 5 residues within 4Å: Chain B: Y.29, L.30, N.35, H.147, A.148 No protein-ligand interaction detected (PLIP) ZN.10: 2 residues within 4Å: Chain A: E.49 Chain B: E.49 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:E.49, B:E.49 ZN.12: 2 residues within 4Å: Chain B: A.52 Chain C: E.137 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain B Metal complexes: C:E.137, B:A.52 ZN.13: 3 residues within 4Å: Chain C: H.145, H.147, H.149 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:H.145, C:H.147, C:H.149, H2O.2 ZN.14: 5 residues within 4Å: Chain C: Y.29, L.30, N.35, H.147, A.148 No protein-ligand interaction detected (PLIP) ZN.15: 2 residues within 4Å: Chain B: E.49 Chain C: E.49 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:E.49, C:E.49

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Loew, C. et al., Crystal Structure Determination and Functional Characterization of the Metallochaperone SlyD from Thermus thermophilus. J.Mol.Biol. (2010)

Release Date

2010-03-31

Peptides

Peptidyl-prolyl cis-trans isomerase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Peptidyl-prolyl cis-trans isomerase

Related Entries With Identical Sequence