SMTL ID : 3cic.1 (1 other biounit)

Structure of BACE Bound to SCH709583

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

1 x 316: N'-[(1S,2S)-2-[(2S)-4-benzyl-3-oxopiperazin-2-yl]-1-(3,5-difluorobenzyl)-2-hydroxyethyl]-5-methyl-N,N-dipropylbenzene-1,3-dicarboxamide(Non-covalent)

316.1: 22 residues within 4Å: Chain A: G.15, Q.16, G.17, L.34, D.36, G.38, S.39, Y.75, T.76, Q.77, G.78, K.111, F.112, I.114, W.119, I.130, Y.202, I.230, D.232, G.234, T.235, T.236 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:L.34, A:Y.75, A:T.76, A:Q.77, A:Q.77, A:Y.202 Hydrogen bonds: A:D.36, A:T.76, A:T.76, A:Q.77, A:D.232, A:G.234, A:T.236 Water bridges: A:N.237 pi-Stacking: A:Y.75

1 x TAR: D(-)-TARTARIC ACID(Non-covalent)

TAR.2: 5 residues within 4Å: Chain A: R.11, N.32, H.53, R.54, N.118 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:N.32, A:R.54, A:R.54, A:N.118 Water bridges: A:R.54, A:N.118 Salt bridges: A:R.11, A:H.53, A:R.54

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cumming, J.N. et al., Rational design of novel, potent piperazinone and imidazolidinone BACE1 inhibitors. Bioorg.Med.Chem.Lett. (2008)

Release Date

2008-06-10

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-secretase 1

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