SMTL ID : 3cid.2 (1 other biounit)

Structure of BACE Bound to SCH726222

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x 318: N'-[(1S,2S)-2-[(4S)-1-benzyl-5-oxoimidazolidin-4-yl]-1-(3,5-difluorobenzyl)-2-hydroxyethyl]-5-methyl-N,N-dipropylbenzene-1,3-dicarboxamide(Non-covalent)

318.1: 23 residues within 4Å: Chain A: G.15, Q.16, G.17, L.34, D.36, G.38, S.39, V.73, P.74, Y.75, T.76, Q.77, G.78, K.111, F.112, I.114, W.119, Y.202, I.230, D.232, G.234, T.235, T.236 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:L.34, A:V.73, A:Y.75, A:Y.75, A:T.76, A:Q.77, A:Q.77, A:Y.202 Hydrogen bonds: A:D.36, A:T.76, A:T.76, A:Q.77, A:D.232, A:G.234, A:T.236 Water bridges: A:N.237 pi-Stacking: A:Y.75

2 x TAR: D(-)-TARTARIC ACID(Non-covalent)

TAR.2: 7 residues within 4Å: Chain A: H.49, F.51, S.109, D.110, K.111, F.112, F.113 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.110, A:K.111, A:F.112, A:F.113 Salt bridges: A:H.49, A:K.111 TAR.3: 5 residues within 4Å: Chain A: R.11, N.32, H.53, R.54, N.118 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:N.32, A:H.53, A:N.118 Water bridges: A:R.54, A:R.54, A:R.54, A:N.118 Salt bridges: A:R.11, A:H.53, A:R.54, A:R.54

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cumming, J.N. et al., Rational design of novel, potent piperazinone and imidazolidinone BACE1 inhibitors. Bioorg.Med.Chem.Lett. (2008)

Release Date

2008-06-10

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Beta-secretase 1

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