SMTL ID : 5dqc.2 (2 other biounits)

Co-crystal of BACE1 with compound 0211

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.47 Å

Oligo State

monomer

Ligands

1 x 5E7: N-[(2S,3R)-3-hydroxy-4-({(2S,3S)-3-hydroxy-1-[(2-methylpropyl)amino]-1-oxobutan-2-yl}amino)-1-phenylbutan-2-yl]-5-[methyl(methylsulfonyl)amino]-N'-[(1R)-1-phenylethyl]benzene-1,3-dicarboxamide(Non-covalent)

5E7.1: 30 residues within 4Å: Chain A: G.15, Q.16, G.17, Y.18, L.34, D.36, G.38, S.39, P.74, Y.75, T.76, Q.77, F.112, I.114, W.119, I.122, I.130, R.132, Y.202, I.230, D.232, S.233, G.234, T.235, T.236, N.237, R.239, R.311, S.329, A.339 27 PLIP interactions: 27 interactions with chain A Hydrophobic interactions: A:Y.18, A:L.34, A:L.34, A:Y.75, A:Y.75, A:Q.77, A:F.112, A:I.114, A:W.119, A:I.122, A:I.130, A:Y.202, A:I.230, A:T.235, A:A.339 Hydrogen bonds: A:G.38, A:S.39, A:T.76, A:T.76, A:Q.77, A:Q.77, A:D.232, A:G.234, A:G.234, A:N.237, A:S.329 Water bridges: A:K.325

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ghosh, A.K. et al., Design of Potent and Highly Selective Inhibitors for Human beta-Secretase 2 (Memapsin 1), a Target for Type 2 Diabetes. Chem Sci (2016)

Release Date

2016-02-17

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Beta-secretase 1

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