SMTL ID : 6nw3.2 (2 other biounits)

BACE1 in complex with a macrocyclic inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

monomer

Ligands

1 x L4J: N-(2-methylpropyl)-N~2~-{[(4S)-17-[(methylsulfonyl)(propyl)amino]-2-oxo-3-azatricyclo[13.3.1.1~6,10~]icosa-1(19),6(20),7,9,15,17-hexaen-4-yl]methyl}-L-norleucinamide(Non-covalent)

L4J.1: 23 residues within 4Å: Chain A: G.15, Q.16, G.17, L.34, D.36, G.38, S.39, P.74, Y.75, T.76, Q.77, F.112, I.122, Y.202, K.228, I.230, D.232, G.234, T.235, T.236, N.237, R.239, S.329 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:L.34, A:Y.75, A:Y.75, A:T.76, A:Q.77, A:F.112, A:I.122, A:I.230, A:T.235 Hydrogen bonds: A:G.38, A:T.76, A:T.76, A:Q.77, A:G.234, A:T.235, A:T.236, A:N.237, A:S.329

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 7 residues within 4Å: Chain A: T.86, R.100, A.101, N.102, E.138, S.143, Q.147 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.100, A:N.102, A:N.102, A:Q.147 SO4.3: 6 residues within 4Å: Chain A: D.8, R.11, C.159, L.165, G.175, G.176 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.8, A:D.8, A:R.11 Water bridges: A:R.11 SO4.4: 5 residues within 4Å: Chain A: T.76, R.239, S.331, S.332, T.333 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.331, A:S.332, A:T.333 Salt bridges: A:R.239

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yen, Y.C. et al., Development of an Efficient Enzyme Production and Structure-Based Discovery Platform for BACE1 Inhibitors. Biochemistry (2019)

Release Date

2019-10-09

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Beta-secretase 1

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