- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x CA: CALCIUM ION(Non-covalent)
- 4 x 2G0: (2S)-1-[(2S)-6-amino-2-({[(2S,3S,4R,5S,6S)-3,4,5-trihydroxy-6-methyltetrahydro-2H-pyran-2-yl]acetyl}amino)hexanoyl]-N-[(1S)-1-carbamoyl-3-methylbutyl]pyrrolidine-2-carboxamide(Non-covalent)
2G0.3: 14 residues within 4Å:- Chain A: N.21, S.22, S.23, G.24, T.45, N.70, E.95, D.96, D.99, D.101, D.104
- Chain B: G.114
- Ligands: CA.1, CA.2
9 PLIP interactions:8 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:T.45, A:D.96
- Hydrogen bonds: A:S.23, A:S.23, A:N.70, A:N.70, A:D.96, A:D.104, B:G.114
2G0.6: 13 residues within 4Å:- Chain A: G.114
- Chain B: N.21, S.22, S.23, T.45, E.95, D.96, G.97, D.99, D.101, D.104
- Ligands: CA.4, CA.5
8 PLIP interactions:7 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:T.45
- Hydrogen bonds: B:S.23, B:S.23, B:D.96, B:D.104, A:G.114
- Water bridges: B:E.95, B:D.99
2G0.9: 12 residues within 4Å:- Chain C: N.21, S.22, S.23, E.95, D.96, G.97, D.99, D.101, D.104
- Chain D: G.114
- Ligands: CA.7, CA.8
6 PLIP interactions:5 interactions with chain C, 1 interactions with chain D- Hydrogen bonds: C:S.23, C:S.23, C:D.96, C:D.101, D:G.114
- Water bridges: C:D.99
2G0.12: 13 residues within 4Å:- Chain C: G.114
- Chain D: N.21, S.22, S.23, T.45, E.95, D.96, G.97, D.99, D.101, D.104
- Ligands: CA.10, CA.11
4 PLIP interactions:4 interactions with chain D- Hydrophobic interactions: D:T.45
- Hydrogen bonds: D:S.23, D:D.96, D:D.101
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Johansson, E.M. et al., Inhibition and dispersion of Pseudomonas aeruginosa biofilms by glycopeptide dendrimers targeting the fucose-specific lectin LecB. Chem.Biol. (2008)
- Release Date
- 2009-01-13
- Peptides
- Fucose-binding lectin PA-IIL: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x CA: CALCIUM ION(Non-covalent)
- 4 x 2G0: (2S)-1-[(2S)-6-amino-2-({[(2S,3S,4R,5S,6S)-3,4,5-trihydroxy-6-methyltetrahydro-2H-pyran-2-yl]acetyl}amino)hexanoyl]-N-[(1S)-1-carbamoyl-3-methylbutyl]pyrrolidine-2-carboxamide(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Johansson, E.M. et al., Inhibition and dispersion of Pseudomonas aeruginosa biofilms by glycopeptide dendrimers targeting the fucose-specific lectin LecB. Chem.Biol. (2008)
- Release Date
- 2009-01-13
- Peptides
- Fucose-binding lectin PA-IIL: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D