SMTL ID : 3di6.1 (1 other biounit)

HIV-1 RT with pyridazinone non-nucleoside inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

hetero-2-2-mer

Ligands

2 x PDZ: 6-(4-chloro-2-fluoro-3-phenoxybenzyl)pyridazin-3(2H)-one(Non-covalent)

PDZ.1: 14 residues within 4Å: Chain A: L.100, K.101, K.102, K.103, V.106, V.179, Y.181, Y.188, G.190, W.229, L.234, H.235, P.236, Y.318 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.100, A:K.103, A:Y.181, A:Y.188, A:W.229, A:L.234, A:Y.318, A:Y.318 Hydrogen bonds: A:K.103, A:K.103 pi-Stacking: A:W.229 Halogen bonds: A:Y.188 PDZ.2: 14 residues within 4Å: Chain C: L.100, K.101, K.102, K.103, V.106, V.179, Y.181, Y.188, G.190, W.229, L.234, H.235, P.236, Y.318 12 PLIP interactions: 12 interactions with chain C Hydrophobic interactions: C:L.100, C:K.103, C:Y.181, C:Y.188, C:W.229, C:L.234, C:Y.318, C:Y.318 Hydrogen bonds: C:K.103, C:K.103 pi-Stacking: C:W.229 Halogen bonds: C:Y.188

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sweeney, Z.K. et al., Discovery and optimization of pyridazinone non-nucleoside inhibitors of HIV-1 reverse transcriptase. Bioorg.Med.Chem.Lett. (2008)

Release Date

2008-08-19

Peptides

Reverse transcriptase/ribonuclease H: AC
p51 RT: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

Reverse transcriptase/ribonuclease H

p51 RT

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