SMTL ID : 3dlg.1

Crystal structure of hiv-1 reverse transcriptase in complex with GW564511.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-1-1-mer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 5 residues within 4Å: Chain A: G.436, A.437, N.460, R.461 Chain B: A.288 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:G.436, A:N.460 Water bridges: A:T.439, B:T.290 Salt bridges: A:R.461 PO4.3: 3 residues within 4Å: Chain B: R.356, R.358, G.359 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.359 Water bridges: B:H.361, B:H.361 Salt bridges: B:R.356

1 x GWE: N-{4-[amino(dihydroxy)-lambda~4~-sulfanyl]-2-methylphenyl}-2-(4-chloro-2-{[3-fluoro-5-(trifluoromethyl)phenyl]carbonyl}phenoxy)acetamide(Non-covalent)

GWE.2: 21 residues within 4Å: Chain A: P.95, L.100, K.101, K.102, K.103, K.104, S.105, V.106, V.179, Y.181, Y.183, Y.188, V.189, G.190, P.225, F.227, W.229, L.234, H.235, P.236, Y.318 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:L.100, A:V.106, A:V.106, A:V.106, A:Y.181, A:F.227, A:L.234, A:P.236 Hydrogen bonds: A:K.103, A:V.106, A:V.106 Water bridges: A:K.102 pi-Stacking: A:Y.188, A:W.229, A:W.229 Halogen bonds: A:V.179, A:Y.188

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ren, J. et al., Structural basis for the improved drug resistance profile of new generation benzophenone non-nucleoside HIV-1 reverse transcriptase inhibitors. J.Med.Chem. (2008)

Release Date

2008-08-12

Peptides

REVERSE TRANSCRIPTASE/RIBONUCLEASE H: A
P51 RT: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

REVERSE TRANSCRIPTASE/RIBONUCLEASE H

P51 RT

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