SMTL ID : 3m8q.1

HIV-1 RT with AMINOPYRIMIDINE NNRTI

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

hetero-oligomer

Ligands

1 x DJZ: 3,5-DIMETHYL-4-{[2-({1-[4-(METHYLSULFONYL)BENZYL]PIPERIDIN-4-YL}AMINO)PYRIMIDIN-4-YL]OXY}BENZONITRILE(Non-covalent)

DJZ.1: 19 residues within 4Å: Chain A: L.100, K.101, K.103, K.104, S.105, V.106, V.179, Y.181, Y.188, V.189, G.190, P.225, F.227, W.229, L.234, H.235, P.236, Y.318 Chain B: E.138 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.100, A:L.100, A:K.103, A:V.106, A:Y.181, A:Y.188, A:Y.188, A:F.227, A:W.229, A:Y.318 Hydrogen bonds: A:K.101, A:K.101 pi-Stacking: A:W.229

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Kertesz, D.J. et al., Discovery of piperidin-4-yl-aminopyrimidines as HIV-1 reverse transcriptase inhibitors. N-benzyl derivatives with broad potency against resistant mutant viruses. Bioorg.Med.Chem.Lett. (2010)

Peptides

Reverse transcriptase/ribonuclease H: A
p51 RT: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Reverse transcriptase/ribonuclease H

p51 RT

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