SMTL ID : 3nbp.1

HIV-1 reverse transcriptase with aminopyrimidine inhibitor 2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.95 Å

Oligo State

hetero-oligomer

Ligands

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 5 residues within 4Å: Chain A: V.442, D.443, E.478, T.497, D.498 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.478 MN.2: 3 residues within 4Å: Chain A: D.443, E.478, D.498 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.443, A:E.478

1 x JGZ: 4-(4-{[4-(4-CYANO-2,6-DIMETHYLPHENOXY)PYRIMIDIN-2-YL]AMINO}PIPERIDIN-1-YL)BENZENESULFONAMIDE(Non-covalent)

JGZ.3: 15 residues within 4Å: Chain A: L.100, K.101, K.103, V.106, V.179, Y.181, Y.188, P.225, F.227, W.229, L.234, H.235, P.236, Y.318 Chain B: E.138 14 PLIP interactions: 13 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:L.100, A:V.106, A:V.106, A:Y.181, A:Y.188, A:Y.188, A:W.229, A:L.234, A:P.236, A:Y.318, B:E.138 Hydrogen bonds: A:K.101, A:K.101 pi-Stacking: A:W.229

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kertesz, D.J. et al., Discovery of piperidin-4-yl-aminopyrimidines as HIV-1 reverse transcriptase inhibitors. N-benzyl derivatives with broad potency against resistant mutant viruses. Bioorg.Med.Chem.Lett. (2010)

Release Date

2010-08-18

Peptides

Reverse transcriptase/ribonuclease H: A
p51 RT: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Reverse transcriptase/ribonuclease H

p51 RT

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