SMTL ID : 3dzg.2 (1 other biounit)

Crystal structure of human CD38 extracellular domain, ara-F-ribose-5'-phosphate/nicotinamide complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

1 x RF5: 2-deoxy-2-fluoro-5-O-phosphono-alpha-D-arabinofuranose(Post Translational Modification)

RF5.1: 12 residues within 4Å: Chain A: L.86, W.87, S.88, R.89, L.107, S.155, F.158, S.182, T.183, F.184, E.188 Ligands: NCA.2 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:W.87, A:W.87, A:W.87, A:R.89, A:S.155, A:T.183, A:F.184 Salt bridges: A:R.89

1 x NCA: NICOTINAMIDE(Non-covalent)

NCA.2: 8 residues within 4Å: Chain A: W.87, L.107, E.108, D.117, W.151, S.155, T.183 Ligands: RF5.1 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:W.87, A:W.151, A:W.151 Hydrogen bonds: A:K.91, A:E.108, A:D.117, A:D.117, A:S.155 Water bridges: A:D.118 pi-Stacking: A:W.151

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, Q. et al., Covalent and Noncovalent Intermediates of an NAD Utilizing Enzyme, Human CD38. Chem.Biol. (2008)

Release Date

2008-11-04

Peptides

ADP-ribosyl cyclase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

ADP-ribosyl cyclase 1

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