SMTL ID : 3dzy.1

Intact PPAR gamma - RXR alpha Nuclear Receptor Complex on DNA bound with Rosiglitazone, 9-cis Retinoic Acid and NCOA2 Peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

hetero-1-1-2-mer

Ligands

1 x 9CR: (9cis)-retinoic acid(Non-covalent)

9CR.1: 14 residues within 4Å: Chain A: I.273, A.276, Q.280, N.311, S.317, F.318, R.321, L.331, A.332, V.347, F.351, C.437, H.440, L.441 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:I.273, A:I.273, A:F.318, A:F.318, A:L.331, A:V.347, A:F.351, A:H.440, A:L.441 Hydrogen bonds: A:A.332 Salt bridges: A:R.321

4 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: C.140, C.143, C.157, C.160, R.189 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.140, A:C.143, A:C.157, A:C.160 ZN.3: 4 residues within 4Å: Chain A: C.176, C.182, C.192, C.195 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.176, A:C.182, A:C.192, A:C.195 ZN.5: 4 residues within 4Å: Chain B: C.53, C.56, C.70, C.73 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.53, B:C.56, B:C.70, B:C.73 ZN.6: 5 residues within 4Å: Chain B: C.90, L.92, C.94, C.104, C.107 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.90, B:C.94, B:C.104, B:C.107

1 x BRL: 2,4-THIAZOLIDIINEDIONE, 5-[[4-[2-(METHYL-2-PYRIDINYLAMINO)ETHOXY]PHENYL]METHYL]-(9CL)(Non-covalent)

BRL.4: 16 residues within 4Å: Chain B: I.223, F.224, C.227, Q.228, R.230, S.231, H.265, Y.269, L.272, V.281, I.283, L.295, M.306, H.391, L.395, Y.415 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:I.223, B:Y.269 Hydrogen bonds: B:R.230, B:S.231, B:Y.415, B:Y.415 pi-Stacking: B:H.391

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chandra, V. et al., Structure of the intact PPAR-gamma-RXR- nuclear receptor complex on DNA. Nature (2008)

Release Date

2008-10-28

Peptides

Retinoic acid receptor RXR-alpha: A
Peroxisome proliferator-activated receptor gamma: B
NCOA2 Peptide: EF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

E
G

F
E

Retinoic acid receptor RXR-alpha

Peroxisome proliferator-activated receptor gamma

NCOA2 Peptide

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