SMTL ID : 3fgd.1

Drugscore FP: Thermoylsin in complex with fragment.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.33 Å

Oligo State

monomer

Ligands

4 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: D.138, E.177, D.185, E.187, E.190 Ligands: CA.2 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.138, A:E.177, A:E.177, A:D.185, A:E.190 CA.2: 5 residues within 4Å: Chain A: E.177, N.183, D.185, E.190 Ligands: CA.1 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.177, A:N.183, A:D.185, A:E.190, H2O.11, H2O.11 CA.3: 3 residues within 4Å: Chain A: D.57, D.59, Q.61 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.57, A:Q.61, H2O.2, H2O.8, H2O.8 CA.4: 4 residues within 4Å: Chain A: Y.193, T.194, I.197, D.200 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:Y.193, A:T.194, A:I.197, A:D.200, H2O.8

1 x ZN: ZINC ION(Non-covalent)

ZN.5: 5 residues within 4Å: Chain A: H.142, H.146, Y.157, E.166 Ligands: BYA.6 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.142, A:H.146, A:E.166

1 x BYA: N-(phenylcarbonyl)-beta-alanine(Non-covalent)

BYA.6: 15 residues within 4Å: Chain A: N.112, A.113, F.130, L.133, V.139, H.142, E.143, H.146, Y.157, E.166, I.188, L.202, R.203, H.231 Ligands: ZN.5 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:F.130, A:F.130, A:L.133, A:V.139, A:I.188, A:L.202 Hydrogen bonds: A:N.112, A:Y.157, A:R.203, A:R.203 Salt bridges: A:H.142, A:H.146, A:H.231

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.7: 5 residues within 4Å: Chain A: W.115, H.146, D.150, Y.157, N.165 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.165 Salt bridges: A:D.150 pi-Cation interactions: A:H.146, A:Y.157

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.8: 5 residues within 4Å: Chain A: T.152, Q.273, Y.274, L.275, T.276 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.152 Water bridges: A:T.272, A:Y.274, A:L.275

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pfeffer, P. et al., Drugscore FP: Profiling Protein-Ligand Interactions using Fingerprint Simplicity paired with Knowledge-Based Potential Fields. To be Published

Release Date

2009-12-15

Peptides

Thermolysin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Thermolysin

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