SMTL ID : 6sc0.1

THERMOLYSIN IN COMPLEX WITH FRAGMENT J22

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.53 Å

Oligo State

monomer

Ligands

4 x CA: CALCIUM ION(Non-covalent)

CA.1: 8 residues within 4Å: Chain A: D.138, E.177, D.185, E.187, I.188, G.189, E.190 Ligands: CA.2 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.138, A:E.177, A:E.177, A:D.185, A:E.190 CA.2: 6 residues within 4Å: Chain A: E.177, N.183, P.184, D.185, E.190 Ligands: CA.1 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.177, A:N.183, A:D.185, A:E.190, H2O.2, H2O.3 CA.3: 3 residues within 4Å: Chain A: D.57, D.59, Q.61 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.57, A:Q.61, H2O.3, H2O.4, H2O.9 CA.4: 4 residues within 4Å: Chain A: Y.193, T.194, I.197, D.200 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:Y.193, A:I.197, A:D.200, H2O.3, H2O.8

1 x ZN: ZINC ION(Non-covalent)

ZN.5: 6 residues within 4Å: Chain A: H.142, H.146, Y.157, E.166, H.231 Ligands: BCT.10 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.142, A:H.146, A:E.166

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.6: 7 residues within 4Å: Chain A: L.202, R.203, Y.211, D.213, H.231, I.232 Ligands: L5Q.9 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.203, A:Y.211

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.7: 2 residues within 4Å: Chain A: L.91, G.95 No protein-ligand interaction detected (PLIP)

1 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.8: 3 residues within 4Å: Chain A: N.37, A.98, A.99 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.99

1 x L5Q: 5-methyl-~{N}-[2,2,2-tris(fluoranyl)ethyl]-1,2-oxazole-3-carboxamide(Non-covalent)

L5Q.9: 11 residues within 4Å: Chain A: N.112, A.113, L.133, V.139, H.142, E.143, L.202, R.203, H.231 Ligands: TRS.6, BCT.10 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.112, A:R.203, A:R.203 pi-Stacking: A:H.231

1 x BCT: BICARBONATE ION(Non-functional Binders)

BCT.10: 11 residues within 4Å: Chain A: N.112, A.113, F.114, H.142, E.143, H.146, Y.157, E.166, H.231 Ligands: ZN.5, L5Q.9 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.113

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Magari, F. et al., THERMOLYSIN IN COMPLEX WITH FRAGMENT J22. To Be Published

Release Date

2020-08-26

Peptides

Thermolysin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

Thermolysin

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