SMTL ID : 3fug.2 (1 other biounit)

Crystal Structure of the Retinoid X Receptor Ligand Binding Domain Bound to the Synthetic Agonist 3-[4-Hydroxy-3-(3,5,5,8,8-pentamethyl-5,6,7,8-tetrahydronaphthalen-2-yl)-phenyl]acrylic Acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-2-2-mer

Ligands

2 x 2E3: (2E)-3-[4-hydroxy-3-(3,5,5,8,8-pentamethyl-5,6,7,8-tetrahydronaphthalen-2-yl)phenyl]prop-2-enoic acid(Non-covalent)

2E3.1: 20 residues within 4Å: Chain A: V.43, I.46, A.49, A.50, Q.53, N.84, L.87, F.91, R.94, I.102, L.104, A.105, V.120, I.123, F.124, V.127, C.210, H.213, L.214, F.217 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:V.43, A:I.46, A:A.50, A:L.87, A:F.91, A:F.91, A:I.102, A:V.120, A:I.123, A:F.124, A:V.127, A:H.213, A:L.214, A:F.217 Hydrogen bonds: A:N.84, A:A.105 Water bridges: A:Q.53, A:F.91 Salt bridges: A:R.94 2E3.2: 20 residues within 4Å: Chain C: V.43, I.46, A.49, A.50, Q.53, N.84, L.87, F.91, R.94, I.102, L.104, A.105, V.120, I.123, F.124, V.127, C.210, H.213, L.214, F.217 19 PLIP interactions: 19 interactions with chain C Hydrophobic interactions: C:V.43, C:I.46, C:A.50, C:L.87, C:F.91, C:F.91, C:I.102, C:V.120, C:I.123, C:F.124, C:V.127, C:H.213, C:L.214, C:F.217 Hydrogen bonds: C:N.84, C:A.105 Water bridges: C:Q.53, C:F.91 Salt bridges: C:R.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Perez Santin, E. et al., Modulating retinoid X receptor with a series of (E)-3-[4-hydroxy-3-(3-alkoxy-5,5,8,8-tetramethyl-5,6,7,8-tetrahydronaphthalen-2-yl)phenyl]acrylic acids and their 4-alkoxy isomers. J.Med.Chem. (2009)

Release Date

2009-05-12

Peptides

Retinoic acid receptor RXR-alpha: AC
Nuclear receptor coactivator 2: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

Retinoic acid receptor RXR-alpha

Nuclear receptor coactivator 2

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