SMTL ID : 4zsh.1

RXR LBD in complex with 9-cis-13,14-dihydroretinoic acid

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-2-2-mer

Ligands

2 x 4XW: (5S,6S,9R,13R)-2,3-didehydro-5,6,7,8,9,10,11,12,13,14-decahydroretinoic acid(Non-covalent)

4XW.1: 11 residues within 4Å: Chain A: I.46, A.49, A.50, Q.53, F.91, R.94, L.104, A.105, V.120, C.210, H.213 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:I.46, A:A.50, A:Q.53, A:F.91, A:F.91, A:F.91, A:L.104, A:V.120, A:H.213 Hydrogen bonds: A:A.105 Water bridges: A:Q.53, A:R.94 Salt bridges: A:R.94 4XW.2: 11 residues within 4Å: Chain C: I.46, A.49, A.50, Q.53, F.91, R.94, L.104, A.105, V.120, C.210, H.213 13 PLIP interactions: 13 interactions with chain C Hydrophobic interactions: C:I.46, C:A.50, C:Q.53, C:F.91, C:F.91, C:F.91, C:L.104, C:V.120, C:H.213 Hydrogen bonds: C:A.105 Water bridges: C:Q.53, C:R.94 Salt bridges: C:R.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ruhl, R. et al., 9-cis-13,14-Dihydroretinoic Acid Is an Endogenous Retinoid Acting as RXR Ligand in Mice. Plos Genet. (2015)

Release Date

2016-03-30

Peptides

Retinoic acid receptor RXR-alpha: AC
NCoA2 peptide: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

Retinoic acid receptor RXR-alpha

NCoA2 peptide

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