SMTL ID : 7uw2.1

Crystal structure of human Retinoid X receptor alpha ligand binding domain complex with UAB116 and coactivator peptide GRIP-1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.88 Å

Oligo State

hetero-1-1-mer

Ligands

1 x OI2: (2E,4E,6Z,8E)-8-{3-[(2S)-butan-2-yl]-2-(3-methylbutyl)cyclohex-2-en-1-ylidene}-3,7-dimethylocta-2,4,6-trienoic acid(Non-covalent)

OI2.1: 17 residues within 4Å: Chain A: V.43, I.46, A.49, A.50, Q.53, W.83, N.84, L.87, F.91, R.94, L.104, A.105, I.123, F.124, V.127, C.210, H.213 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:V.43, A:I.46, A:I.46, A:A.49, A:A.50, A:Q.53, A:W.83, A:N.84, A:L.87, A:F.91, A:F.91, A:F.91, A:F.91, A:L.104, A:I.123, A:F.124, A:V.127, A:H.213 Hydrogen bonds: A:A.105 Water bridges: A:F.91 Salt bridges: A:R.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Atigadda, V.R. et al., Conformationally Defined Rexinoids for the Prevention of Inflammation and Nonmelanoma Skin Cancers. J.Med.Chem. (2022)

Release Date

2023-03-15

Peptides

Retinoic acid receptor RXR-alpha: A
Nuclear receptor coactivator 2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Retinoic acid receptor RXR-alpha

Nuclear receptor coactivator 2

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