SMTL ID : 3r5m.1

Crystal structure of RXRalphaLBD complexed with the agonist magnolol

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-2-2-mer

Ligands

2 x MLO: 5,5'-di(prop-2-en-1-yl)biphenyl-2,2'-diol(Non-covalent)

MLO.1: 14 residues within 4Å: Chain A: I.46, A.49, A.50, Q.53, N.84, L.87, I.88, F.91, L.104, I.123, F.124, V.127, C.210, L.214 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:I.46, A:I.46, A:A.49, A:A.50, A:Q.53, A:L.87, A:F.91, A:F.91, A:F.91, A:L.104, A:I.123, A:F.124, A:V.127 Hydrogen bonds: A:N.84 MLO.2: 12 residues within 4Å: Chain C: I.46, A.49, A.50, N.84, L.87, F.91, L.104, I.123, V.127, C.210, L.214, F.217 11 PLIP interactions: 11 interactions with chain C Hydrophobic interactions: C:I.46, C:A.49, C:A.50, C:L.87, C:F.91, C:F.91, C:L.104, C:I.123, C:V.127, C:F.217 Hydrogen bonds: C:N.84

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, H. et al., Molecular determinants of magnolol targeting both RXR(alpha) and PPAR(gamma). Plos One (2011)

Release Date

2012-02-08

Peptides

Retinoic acid receptor RXR-alpha: AC
Nuclear receptor coactivator 2: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

Retinoic acid receptor RXR-alpha

Nuclear receptor coactivator 2

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