SMTL ID : 1mvc.1

Crystal structure of the human RXR alpha ligand binding domain bound to the synthetic agonist compound BMS 649 and a coactivator peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-oligomer

Ligands

2 x BM6: 4-[2-(5,5,8,8-TETRAMETHYL-5,6,7,8-TETRAHYDRO-NAPHTHALEN-2-YL)-[1,3]DIOXOLAN-2-YL]-BENZOIC ACID(Non-covalent)

BM6.1: 19 residues within 4Å: Chain A: I.46, A.49, A.50, Q.53, W.83, N.84, L.87, I.88, F.91, R.94, I.102, L.104, A.105, I.123, V.127, C.210, H.213, L.214, F.217 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:I.46, A:A.50, A:L.87, A:F.91, A:F.91, A:F.91, A:I.102, A:L.104, A:I.123, A:V.127, A:H.213, A:L.214 Hydrogen bonds: A:A.105 Water bridges: A:F.91 Salt bridges: A:R.94 BM6.2: 19 residues within 4Å: Chain C: I.46, A.49, A.50, Q.53, W.83, N.84, L.87, I.88, F.91, R.94, I.102, L.104, A.105, I.123, V.127, C.210, H.213, L.214, F.217 15 PLIP interactions: 15 interactions with chain C Hydrophobic interactions: C:I.46, C:A.50, C:L.87, C:F.91, C:F.91, C:F.91, C:I.102, C:L.104, C:I.123, C:V.127, C:H.213, C:L.214 Hydrogen bonds: C:A.105 Water bridges: C:F.91 Salt bridges: C:R.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Egea, P.F. et al., Molecular Recognition of Agonist Ligands by RXRs. MOL.ENDOCRINOL. (2002)

Release Date

2002-10-16

Peptides

RXR retinoid X receptor: AC
Nuclear receptor coactivator 2: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

RXR retinoid X receptor

Nuclear receptor coactivator 2

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