SMTL ID : 3h5z.1

Crystal Structure of Leishmania major N-myristoyltransferase with bound myristoyl-CoA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.49 Å

Oligo State

monomer

Ligands

1 x MYA: TETRADECANOYL-COA(Non-covalent)

MYA.1: 32 residues within 4Å: Chain A: H.29, A.30, F.31, W.32, N.96, Y.97, V.98, I.183, N.184, F.185, L.186, C.187, V.188, R.193, E.194, K.195, R.196, L.197, A.198, P.199, I.202, T.206, V.209, N.210, W.215, Q.216, A.217, Y.219, T.220, V.223, L.225, Y.421 38 PLIP interactions: 38 interactions with chain A Hydrophobic interactions: A:W.32, A:W.32, A:Y.97, A:I.183, A:I.183, A:I.183, A:L.186, A:L.186, A:V.188, A:A.198, A:I.202, A:V.209, A:A.217, A:Y.219, A:Y.219, A:Y.421, A:Y.421 Hydrogen bonds: A:A.30, A:F.31, A:W.32, A:Y.97, A:F.185, A:L.186, A:L.186, A:V.188, A:R.193, A:R.193, A:E.194, A:R.196, A:L.197, A:A.198 Water bridges: A:K.195, A:K.195, A:R.196, A:R.196 Salt bridges: A:H.29, A:R.196, A:R.196

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: Y.234, Y.343, I.345, Y.362, M.437, L.438 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.234, A:L.438

11 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.3: 2 residues within 4Å: Chain A: Q.291, V.336 No protein-ligand interaction detected (PLIP) UNX.4: 4 residues within 4Å: Chain A: F.105, F.107, S.347 Ligands: UNX.9 No protein-ligand interaction detected (PLIP) UNX.5: 5 residues within 4Å: Chain A: W.75, W.76, T.77, R.208 Ligands: UNX.6 No protein-ligand interaction detected (PLIP) UNX.6: 3 residues within 4Å: Chain A: W.75, R.208 Ligands: UNX.5 No protein-ligand interaction detected (PLIP) UNX.7: 2 residues within 4Å: Chain A: K.429 Ligands: UNX.8 No protein-ligand interaction detected (PLIP) UNX.8: 1 residues within 4Å: Ligands: UNX.7 No protein-ligand interaction detected (PLIP) UNX.9: 4 residues within 4Å: Chain A: V.98, E.99, F.105 Ligands: UNX.4 No protein-ligand interaction detected (PLIP) UNX.10: 5 residues within 4Å: Chain A: R.401, S.402, F.403, V.404, E.405 No protein-ligand interaction detected (PLIP) UNX.11: 3 residues within 4Å: Chain A: N.332, D.333, K.335 No protein-ligand interaction detected (PLIP) UNX.12: 1 residues within 4Å: Chain A: A.88 No protein-ligand interaction detected (PLIP) UNX.13: 1 residues within 4Å: Chain A: R.94 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Frearson, J.A. et al., N-myristoyltransferase inhibitors as new leads to treat sleeping sickness. Nature (2010)

Release Date

2009-05-12

Peptides

Glycylpeptide N-tetradecanoyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glycylpeptide N-tetradecanoyltransferase

Related Entries With Identical Sequence