- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-trimer
- Ligands
- 5 x SO4: SULFATE ION(Non-functional Binders)
- 4 x CL: CHLORIDE ION(Non-functional Binders)
CL.2: 3 residues within 4Å:- Chain A: S.120, Q.121, R.122
Ligand excluded by PLIPCL.3: 3 residues within 4Å:- Chain A: G.90, V.93, K.94
Ligand excluded by PLIPCL.7: 3 residues within 4Å:- Chain B: D.26, K.27
- Chain C: D.143
Ligand excluded by PLIPCL.12: 4 residues within 4Å:- Chain C: Q.57, I.59, V.69, S.70
Ligand excluded by PLIP- 4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.4: 7 residues within 4Å:- Chain A: A.38, T.39, P.41, I.53, Y.54, T.71, I.73
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:T.39, A:Y.54
- Water bridges: A:S.37, A:T.39
EDO.5: 8 residues within 4Å:- Chain A: R.84, I.85, A.86, A.101, G.102, V.103
- Chain C: R.84, P.87
4 PLIP interactions:2 interactions with chain A, 2 interactions with chain C- Hydrogen bonds: A:R.84, C:R.84, C:R.84
- Water bridges: A:T.99
EDO.8: 2 residues within 4Å:- Chain A: T.109
- Chain B: E.153
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:E.153, A:T.109
EDO.14: 5 residues within 4Å:- Chain B: S.89
- Chain C: V.103, V.104, D.105, Y.108
5 PLIP interactions:2 interactions with chain B, 3 interactions with chain C- Hydrogen bonds: B:S.89, B:S.89, C:D.105, C:D.105
- Water bridges: C:V.103
- 1 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tchigvintsev, A. et al., Structure and activity of the Saccharomyces cerevisiae dUTP pyrophosphatase DUT1, an essential housekeeping enzyme. Biochem.J. (2011)
- Release Date
- 2009-06-16
- Peptides
- Deoxyuridine 5'-triphosphate nucleotidohydrolase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
DB
EC
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-trimer
- Ligands
- 5 x SO4: SULFATE ION(Non-functional Binders)
- 4 x CL: CHLORIDE ION(Non-functional Binders)
- 4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 1 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tchigvintsev, A. et al., Structure and activity of the Saccharomyces cerevisiae dUTP pyrophosphatase DUT1, an essential housekeeping enzyme. Biochem.J. (2011)
- Release Date
- 2009-06-16
- Peptides
- Deoxyuridine 5'-triphosphate nucleotidohydrolase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
DB
EC
F